View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7317_low_27 (Length: 273)
Name: NF7317_low_27
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 38118180 - 38117934
Alignment:
| Q |
19 |
cctttgatccaaactttggagatatcccctgccccctacattgcttataagcactagttcagaatagtctctcccattgaatatatagaatttccaaata |
118 |
Q |
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| T |
38118180 |
cctttgatccaaactttggagatatcccctgccccctacattgcttataagcactagttcagaatagtctctcccattgaatatatagaatttccaaata |
38118081 |
T |
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| Q |
119 |
actttttcccacttttaaagatgctgacttagtgaattaagtgaaccttggtagaaattataaattacaatacagtagtaaattgaaatgaaatggtaca |
218 |
Q |
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| T |
38118080 |
actttttcccacttttaaagatgctgacttagtgaattaagtgaaccttggtagaaattataaattacaatacagtagtaaattgaaatgaaatggtaca |
38117981 |
T |
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| Q |
219 |
accgctcaaaaattcaactgggtctgtcgatcgtgtatattcatctc |
265 |
Q |
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| T |
38117980 |
accgctcaaaaattcaactgagtctgtcgatcgtgtatattcatctc |
38117934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 38161699 - 38161606
Alignment:
| Q |
102 |
tatagaatttccaaataactttttcccacttttaaagatgctgacttagtgaattaagtgaaccttggtagaaattataaattacaatacagta |
195 |
Q |
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| T |
38161699 |
tatagaattaccaattaactttttccctcttataaagatactgaattagtgaattaagtgaaccttggtagaaattataaattacaatacagta |
38161606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 38165816 - 38165735
Alignment:
| Q |
19 |
cctttgatccaaactttggagatatcccctgc--cccctacattgcttataagcactagttcagaatagtctctcccattga |
98 |
Q |
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| T |
38165816 |
cctttgatccaaactttggagatatcacctgctccccctacattgcttataagcactagttcaaaatagtctcttccattga |
38165735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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