View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7317_low_31 (Length: 239)
Name: NF7317_low_31
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 38062617 - 38062404
Alignment:
| Q |
9 |
agaaattcttttataaattaattttctagcagcatatgcataacataaccaacaaaaaatgattcctctaagatcatatttgattattgaactaattgct |
108 |
Q |
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| T |
38062617 |
agaaattattttataaattaattttctagcagcatatgcataacataaccaacaaaaaatgattcctctaagatcatatttgattattgtactaattgct |
38062518 |
T |
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| Q |
109 |
gttttattttcattcacatattctgcaattgatactactaaacatgaagaaaatttcctacaatgtctctatagttattcacataactcaacttcaatgt |
208 |
Q |
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| T |
38062517 |
gttttcttttcattcacatattctgcaattgatactactaaacatgaagaaaatttcctacaatgtctctatagttattcacataactcaacttcaatgt |
38062418 |
T |
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| Q |
209 |
ctaaacttgtgtac |
222 |
Q |
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|||||||||||||| |
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| T |
38062417 |
ctaaacttgtgtac |
38062404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 38057890 - 38058050
Alignment:
| Q |
62 |
aaaaaatgattcctctaagatcatatttgattattgaactaattgctgttttattttcattcacatattctgcaattgatactactaaacatgaagaaaa |
161 |
Q |
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| T |
38057890 |
aaaaaatgatgcctctaaactcatattttactattctactaattgctctcttattttcatatacatcttcttcaattgatactagtacacatgaagaaaa |
38057989 |
T |
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| Q |
162 |
tttcctacaatgtctctatagttattcacataactcaacttcaatgtctaaacttgtgtac |
222 |
Q |
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| T |
38057990 |
tttccttgaatgtctctatagttattcacataactcaacttcaatctctgaagttgtgtac |
38058050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 222
Target Start/End: Original strand, 38081277 - 38081463
Alignment:
| Q |
36 |
agcagcatatgcataacataaccaacaaaaaatgattcctctaagatcatatttgattattgaactaattgctgttttattttcattcacatattctgca |
135 |
Q |
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| T |
38081277 |
agcatcatatgcacaacattactaaaacaaaatgatgcctctaagctcatatttgtctgttgcacttattgctattttattttcatatgcatcttctgca |
38081376 |
T |
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| Q |
136 |
attgatactactaaacatgaagaaaatttcctacaatgtctctatagttattcacataactcaacttcaatgtctaaacttgtgtac |
222 |
Q |
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| T |
38081377 |
attgatactaatacttatgaagataacttccttcaatgtctttctagttattcacataactcaacttcaatctctaaagttgtgtac |
38081463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 38072215 - 38072378
Alignment:
| Q |
59 |
aacaaaaaatgattcctctaagatcatatttgattattgaactaattgctgttttattttcattcacatattctgcaattgatactactaaacatgaaga |
158 |
Q |
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| T |
38072215 |
aacaaaaaatgatgcctctacgcttatatttgacaattgtactaatagcaattgcattttcatttacatcttttgcaattgatacaagtcctcatgaaga |
38072314 |
T |
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| Q |
159 |
aaatttcctacaatgtctctatagttattcacataactcaacttcaatgtctaaacttgtgtac |
222 |
Q |
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| T |
38072315 |
taatttccttcaatgtctctatagttattcacataacataacttcaatctctaaagttgtgtac |
38072378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 38085719 - 38085888
Alignment:
| Q |
62 |
aaaaaatgattcctctaagatcatatttgattattgaactaattgctgttttattttcattcacatattctgcaattgatactactaa----ac--atga |
155 |
Q |
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| T |
38085719 |
aaaaaatgatgcatctaggctcatacttgtctattgtactaattgctattttattttcatttacatcttcagcaattggtactactactactactaatga |
38085818 |
T |
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| Q |
156 |
agaaaat---ttcctacaatgtctctatagttattcacataactcaacttcaatgtctaaacttgtgtac |
222 |
Q |
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| T |
38085819 |
agataatagcttccttcaatgtctctatagctattcacataactccacttcaatctctaaagttgtgtac |
38085888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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