View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7317_low_33 (Length: 230)
Name: NF7317_low_33
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 50428197 - 50427990
Alignment:
| Q |
1 |
cagaaacaatcccaaattctctttcctttattgtatataaactatatccttgcatctccaatgtgcttcctatgtacttaccagaagtgaatatcactga |
100 |
Q |
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| T |
50428197 |
cagaaacaatcccaaattctctttcctttgttgtatataaactatatccttgcatctccaatgtgcttcctatgtacttaccagaagtgaatatcactga |
50428098 |
T |
|
| Q |
101 |
gaaaaccatgtacactgctttgctatcaagctgcgaatttacgtacacgccctgagcactgccaaggagtgttgaatccattgcgggtccctctgttact |
200 |
Q |
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| T |
50428097 |
gaaaaccatgtacactgctttgctatcaagctgcgaatttacgtacacgccctgagcactgccaaggagtgttgaatccattgcgggtccctctgttact |
50427998 |
T |
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| Q |
201 |
ggatcatc |
208 |
Q |
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|||||||| |
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| T |
50427997 |
ggatcatc |
50427990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 50423022 - 50422815
Alignment:
| Q |
3 |
gaaacaatcccaaattctctttcctttattgtatataaactatatccttgcatctccaatgtgcttcctatgtacttaccagaagtgaatatcactgaga |
102 |
Q |
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|||||||| |||||||||| |||||| |||| ||| | | ||||||| |||||||| ||||||||| | |||| ||||| ||||||||||| |||| |
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| T |
50423022 |
gaaacaattccaaattctcgttccttcgttgtgaatatatcagatccttgaatctccaaggtgcttcctctatactcaccagctgtgaatatcaccgaga |
50422923 |
T |
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| Q |
103 |
aaaccatgtacactgctttgctatcaagctgcgaatttacgtacacgccctgagcactgccaaggagtgttgaatccattgcgggtccctctgttactgg |
202 |
Q |
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| T |
50422922 |
aaaccatgtacaaagctttaccatcaagctgcgaatttatgtacgtgccttgagctctaccgatgagttttgaatccattgtaggtccctcggttactgg |
50422823 |
T |
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| Q |
203 |
atcatcaa |
210 |
Q |
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||| |||| |
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| T |
50422822 |
atcgtcaa |
50422815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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