View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7317_low_36 (Length: 214)
Name: NF7317_low_36
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_low_36 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 17657044 - 17656831
Alignment:
| Q |
1 |
acatcgcggcatgcctgatggttctgaacatgctgagattgatgtgcgccaacagaacagagaaaagccttcatatcatagaagtgaaaagagttccaat |
100 |
Q |
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| T |
17657044 |
acatcgcggcacgcctgatggttctgaacatgctgagattgatgtgcgccaacagaacagagaaaagccttcatatcacagaagtgataagagttccaat |
17656945 |
T |
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| Q |
101 |
catcatgaaaaacataagctgagaaaaagcattcacaagcattgaataactcgtttcgactagaatgtgcattgcaaaaattgtggagcaatgcacaatt |
200 |
Q |
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| T |
17656944 |
catcgtgaaaaacataagctgagaaaaagcattcacaagcattgaataactcgtttcgactagaatgtgcatcgcaaaaattgtggagcaatgcacaatt |
17656845 |
T |
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| Q |
201 |
tttcaataactttc |
214 |
Q |
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|||||||||||||| |
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| T |
17656844 |
tttcaataactttc |
17656831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 17730519 - 17730318
Alignment:
| Q |
13 |
gcctgatggttctgaacatgctgagattgatgtgcgccaacagaacagagaaaagccttcatatcatagaagtgaaaagagttccaatcatcatgaaaaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |
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| T |
17730519 |
gcctgatggttctgaacatgctgagattgatgtgcgccaacagaacagagaaaagccttcatatcatagaagtgaaaagagttacattcatcgtgaaaaa |
17730420 |
T |
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| Q |
113 |
cataagctgagaaaaagcattcacaagcattgaataactcgtttcgactagaatgtgcattgcaaaaattgtggagcaatgcacaatttttcaataactt |
212 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||| || || ||||||||||||| |||||| |||||| ||||| |
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| T |
17730419 |
cataagctgagaaaaagctttcacaagcattgaataactcatttcaacttgaatgtgtatcacacgaattgtggagcaaggcacaagttttcacaaactt |
17730320 |
T |
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| Q |
213 |
tc |
214 |
Q |
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|| |
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| T |
17730319 |
tc |
17730318 |
T |
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