View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7317_low_37 (Length: 211)
Name: NF7317_low_37
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_low_37 |
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| [»] scaffold0793 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 726984 - 727124
Alignment:
| Q |
16 |
aatatattcgattctcataattaacatttgtaaatctttgttaacttaaatatccgaaattcaattcatctaaactttcttnnnnnnnnnnnnnnnntag |
115 |
Q |
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| T |
726984 |
aatatattcaattctcataactaacatttgtaaatctttgttaacttaaatatcccaaattcaattcatctaaactttcttaaaaaaaaaaaaaaaatag |
727083 |
T |
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| Q |
116 |
attagatctaaatttctgcaatagaaattaagcaacctctt |
156 |
Q |
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| T |
727084 |
attagatctaaatttctgcaatagaaattaagcaacctctt |
727124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 753859 - 753779
Alignment:
| Q |
16 |
aatatattcgattctcataattaacatttgtaaatctttgttaacttaaatatccgaaattcaattcatctaaactttctt |
96 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
753859 |
aatatattcaattctcataactaacatttgtaaatctttgttaacttaaatatccgaaattcaattcatctaaactttctt |
753779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0793 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0793
Description:
Target: scaffold0793; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 5824 - 5683
Alignment:
| Q |
16 |
aatatattcgattctcataattaacatttgtaaatctttgttaacttaaatatccgaaattcaattcatctaaactttctt-nnnnnnnnnnnnnnnnta |
114 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5824 |
aatatattcaattctcataactaacatttgtaaatctttgttaacttaaatatccgaaattcaattcatctaaactttcttaaaaaaaaaataaaaaata |
5725 |
T |
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| Q |
115 |
gattagatctaaatttctgcaatagaaattaagcaacctctt |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
5724 |
gattagatctaaatttctgcaatagaaattaagcaacctctt |
5683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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