View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7317_low_6 (Length: 586)
Name: NF7317_low_6
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Original strand, 10918675 - 10919245
Alignment:
| Q |
1 |
aattataatgtttcaacatcttgagccaacctccacctcaaactgagatctaggttttgacagttacgtttttagaatcaatcnnnnnnnnnnnnnnnnn |
100 |
Q |
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| T |
10918675 |
aattataatgtttcaacatcttgagccaacctccacctcaaactgagatctaggttttgacagttacatttttaaaatcaatcaaaaagaagaaaacaaa |
10918774 |
T |
|
| Q |
101 |
nnnn-gatattttttaaatccatgtattttactcactgcaaccatgatgtttctggaaaaatccatcgacaaagatgattgatctttttagaatgcacga |
199 |
Q |
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| T |
10918775 |
aaaaagatattttttaaatccatgtattttactcacggcagccataatgtttctggaaaaacccatcgacaaagacgattgaccttcttagaatgcacga |
10918874 |
T |
|
| Q |
200 |
tttagagatgaaaacaaaaggaaagaaaatattacggtcctgagaccaatatgtattccaaatctaacattttcagccaaaccagtactgatctaggtaa |
299 |
Q |
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| T |
10918875 |
tttagggatgaaaacaaaaggaaagaaaatattacggtcctgagaccaatatgtattccag--ctaccattttcagccaaaccaataccgatctagacaa |
10918972 |
T |
|
| Q |
300 |
gtaggtgttgaaagtttgttttggtgttgatgaaaaacgtatcagatgaagataaaatggtttgatgaa--ggttcagtgatatgagatgaaagggttca |
397 |
Q |
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| T |
10918973 |
gtaggtgttgaaagtttgttttggtgttgatgaaaaacgtatcagatgaagataaaatggtttgacgaaagggttcagtgatatgagatgaaagggttca |
10919072 |
T |
|
| Q |
398 |
tcattgcaaaggaaaaaactagaaaaggaaatgaatatgattgtggtgaataatttggggttgatggagaaattttggctcatgattggtgtttgatgat |
497 |
Q |
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| T |
10919073 |
tcatagcaaaggaaaaaactagaaaaggaaatgaatatgattgtggtgaataatttggggttgatacagaaattttggctcatgattggtgtttgatgat |
10919172 |
T |
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| Q |
498 |
atgttatagatatagctcaaccccaatttccgtgaaatatagttgctcctgaatattcctttatgctatattt |
570 |
Q |
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| T |
10919173 |
atgttatagatatagctcaaccccaattttcgtgaaatatagttgctcctgaatatgcctttatgctatattt |
10919245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 131 - 570
Target Start/End: Original strand, 43958553 - 43958992
Alignment:
| Q |
131 |
ctcactgcaaccatgatgtttctggaaaaatccatcgacaaagatgattgatctttttagaatgcacgatttagagatgaaaacaaaaggaaagaaaata |
230 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||| |||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
43958553 |
ctcactgcagccatgatgtttctggaaaaacccatcgacaaagacgattgaccttcttagaattcacgatttagggatgaaaacaaaaggaaagaaaata |
43958652 |
T |
|
| Q |
231 |
ttacggtcctgagaccaatatgtattccaaatctaacattttcagccaaaccagtactgatctaggtaagtaggtgttgaaagtttgttttggtgttgat |
330 |
Q |
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| T |
43958653 |
ttacggtcctgagaccaatatgtattccag--ctaccattttcagccaaaccagtaccgatctaggcaagtaggtgttgaaagtttgttttggtgttgat |
43958750 |
T |
|
| Q |
331 |
gaaaaacgtatcagatgaagataaaatggtttgatgaa--ggttcagtgatatgagatgaaagggttcatcattgcaaaggaaaaaactagaaaaggaaa |
428 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43958751 |
gaaaaacctatcagatgaagataaaatggtttgatgaaagggttaagtgatatgagatgaaagggttcatcattgcaaaggaaaaaactagaaaaggaaa |
43958850 |
T |
|
| Q |
429 |
tgaatatgattgtggtgaataatttggggttgatggagaaattttggctcatgattggtgtttgatgatatgttatagatatagctcaaccccaatttcc |
528 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43958851 |
tgaatataattgtggtgaataatttggggttgatgcagaaattttggctcatgatcggtgtttgatgatatgttatagatatagctcaaccccaatttcc |
43958950 |
T |
|
| Q |
529 |
gtgaaatatagttgctcctgaatattcctttatgctatattt |
570 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43958951 |
gtgaaatatagttgctcctgaatatgcctttatgctatattt |
43958992 |
T |
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