View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7317_low_8 (Length: 527)

Name: NF7317_low_8
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7317_low_8
NF7317_low_8
[»] chr3 (4 HSPs)
chr3 (16-512)||(39140376-39140870)
chr3 (246-309)||(41264839-41264902)
chr3 (234-301)||(48660129-48660196)
chr3 (244-309)||(36343802-36343867)
[»] chr8 (2 HSPs)
chr8 (234-300)||(2259804-2259870)
chr8 (234-300)||(35699652-35699718)
[»] chr2 (2 HSPs)
chr2 (234-304)||(36330481-36330551)
chr2 (269-333)||(13783439-13783503)
[»] chr7 (2 HSPs)
chr7 (244-304)||(23777067-23777127)
chr7 (270-344)||(19367103-19367177)
[»] chr5 (3 HSPs)
chr5 (244-304)||(27514504-27514564)
chr5 (184-250)||(34071307-34071373)
chr5 (270-320)||(43259889-43259939)
[»] chr4 (7 HSPs)
chr4 (242-310)||(21188100-21188168)
chr4 (117-226)||(43955454-43955573)
chr4 (270-320)||(3257828-3257878)
chr4 (234-336)||(32896611-32896713)
chr4 (242-315)||(27246246-27246319)
chr4 (244-297)||(43955631-43955684)
chr4 (248-300)||(10350582-10350634)


Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 512
Target Start/End: Original strand, 39140376 - 39140870
Alignment:
Q  16 ctatcatagcaaataattggatgtgggcaaacaatccaaaattccaaaccgaactgctgaattaaaccaaacnnnnnnnngaaaactaaaccattactat 115  Q
    |||||| ||||||||||||||||||||||||||| |||||| ||| |||||     ||||||||||| |||          |||||||||||||||||||    
T  39140376 ctatcacagcaaataattggatgtgggcaaacaaaccaaaaatccgaaccg-----ctgaattaaacaaaaaaaaaaa---aaaactaaaccattactat 39140467  T
Q  116 ccaattatgaaactgaaatagttcgatttggttcaaaac-----ggttcaactcaaaacagttcagtaactacaatttaatttcgtttggtttttatata 210  Q
    |||||||||||||||||||||||||||| ||||||||||     ||||| |||| |||||||||| |||||||||||  |||||||||||||||||||||    
T  39140468 ccaattatgaaactgaaatagttcgattcggttcaaaacagttcggttcgactcgaaacagttcaataactacaattcgatttcgtttggtttttatata 39140567  T
Q  211 ttctttttaacggtactagtcataacacttcgattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttccattcg 310  Q
    |||||||||||||||| ||  ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  39140568 ttctttttaacggtaccagcgataacacttcggttcaattcaaaatgcagacaattcgattcagttcaatcattttaaacttaacaaacagtttcattcg 39140667  T
Q  311 attcaa-tttttattccaaactgagccgtgcccactctttcaaataattagtttttctctcaatttgttcttctctttttcagattcgtgttttcaatgt 409  Q
    |||||| ||||||||||||||||| || | ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39140668 attcaaatttttattccaaactgaaccatacccactccttcaaataatcagtttttctctcaatttgttcttctctttttcagattcgtgttttgaatgt 39140767  T
Q  410 agtatttgtaccatgacattcgctttaaaagttcaccaataataagggcattcacttcaaagagatgttattgactccatttttatttctttttctcctt 509  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39140768 agtatttgtaccatgacattcgctttaaaagttcaccaatgaaaagggcatccacttcaaagagatgttattgactccatttttatttctttttctcctt 39140867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 41264902 - 41264839
Alignment:
Q  246 cagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttccattc 309  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  41264902 cagttcaaaatacaaacaattcgattcagttcaattattttaaatttaacaaacagttcgattc 41264839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 48660196 - 48660129
Alignment:
Q  234 aacacttcgattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacag 301  Q
    |||| ||||||||| ||| ||||||| |||||| |||||| |||||| ||||||||||| ||||||||    
T  48660196 aacagttcgattcaattcgaaatgcaaacaatttgattcaattcaattattttaaattttacaaacag 48660129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 36343802 - 36343867
Alignment:
Q  244 ttcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttccattc 309  Q
    |||| ||||||||||| ||||||   |||| |||||| ||||||||||||||| ||||||| ||||    
T  36343802 ttcaattcaaaatgcaaacaatttagttcaattcaattattttaaatttaacatacagttcaattc 36343867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 2259870 - 2259804
Alignment:
Q  234 aacacttcgattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaaca 300  Q
    |||| |||| |||| || |||||||| ||| |||||||| ||||||| |||||||||||||||||||    
T  2259870 aacagttcggttcaatttaaaatgcaaacagttcgattcggttcaattattttaaatttaacaaaca 2259804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 300
Target Start/End: Original strand, 35699652 - 35699718
Alignment:
Q  234 aacacttcgattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaaca 300  Q
    |||| |||| |||||||| ||||||| ||||||| || ||||||||| |||||||||||| ||||||    
T  35699652 aacagttcggttcagttcgaaatgcaaacaattcaatccagttcaattattttaaatttatcaaaca 35699718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 36330481 - 36330551
Alignment:
Q  234 aacacttcgattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttc 304  Q
    |||| ||| ||||||||||||||||| | | |||||||||||||| | ||||||| ||||||||| |||||    
T  36330481 aacagttcaattcagttcaaaatgcaaatagttcgattcagttcagttattttaattttaacaaatagttc 36330551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 13783439 - 13783503
Alignment:
Q  269 attcagttcaatcattttaaatttaacaaacagttccattcgattcaatttttattccaaactga 333  Q
    |||||||| | | ||||||||||||||||||| |||  |||||||| |||||||| |||||||||    
T  13783439 attcagtttagttattttaaatttaacaaacaattcagttcgattcgatttttatcccaaactga 13783503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 23777127 - 23777067
Alignment:
Q  244 ttcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttc 304  Q
    ||||||||||||| || ||| |||  ||||||||||| |||||||||||| ||||||||||    
T  23777127 ttcagttcaaaatacaaacatttcagttcagttcaattattttaaatttagcaaacagttc 23777067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 19367177 - 19367103
Alignment:
Q  270 ttcagttcaatcattttaaatttaacaaacagttccattcgattcaatttttattccaaactgagccgtgcccac 344  Q
    ||||||||| | |||||||||||| ||||||||||  ||||||||| |||| || || |||||| || |||||||    
T  19367177 ttcagttcagttattttaaatttagcaaacagttcagttcgattcagttttcatcccgaactgaaccatgcccac 19367103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 27514504 - 27514564
Alignment:
Q  244 ttcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttc 304  Q
    |||||||| ||||||| ||||||   ||||||||||| |||| ||||||||||||||||||    
T  27514504 ttcagttcgaaatgcaaacaatttagttcagttcaattatttaaaatttaacaaacagttc 27514564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 34071307 - 34071373
Alignment:
Q  184 aatttaatttcgtttggtttttatatattctttttaacggtactagtcataacacttcgattcagtt 250  Q
    |||||||||||||||||||||| |||||| |||  || ||||| | | |||||| ||||||||||||    
T  34071307 aatttaatttcgtttggtttttttatattttttacaatggtaccaataataacaattcgattcagtt 34071373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 43259889 - 43259939
Alignment:
Q  270 ttcagttcaatcattttaaatttaacaaacagttccattcgattcaatttt 320  Q
    ||||||||| | |||||||||||||||||||||||  ||||||||| ||||    
T  43259889 ttcagttcagttattttaaatttaacaaacagttcagttcgattcagtttt 43259939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 21188168 - 21188100
Alignment:
Q  242 gattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttccattcg 310  Q
    |||| |||||||||| || ||| || ||||| ||| ||| |||||||||||| ||||||||||||||||    
T  21188168 gatttagttcaaaatacaaacagtttgattcggtttaataattttaaatttatcaaacagttccattcg 21188100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 43955454 - 43955573
Alignment:
Q  117 caattatgaaactgaaatagttcgatttggttcaaaac-----ggttcaactcaaaacagttcagtaactaca-----atttaatttcgtttggttttta 206  Q
    ||||| ||||||||||| ||||||||| ||||||||||     ||||||| |  ||||||||| ||||||| |     |||| ||||||||||||||||     
T  43955454 caattctgaaactgaaacagttcgattcggttcaaaacagttcggttcaatttgaaacagttcggtaactaaactaaaatttgatttcgtttggtttttt 43955553  T
Q  207 tatattctttttaacggtac 226  Q
    |||||| |||| ||||||||    
T  43955554 tatatttttttcaacggtac 43955573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 3257828 - 3257878
Alignment:
Q  270 ttcagttcaatcattttaaatttaacaaacagttccattcgattcaatttt 320  Q
    ||||||||||| ||| |||||||| ||||||||||  ||||||||||||||    
T  3257828 ttcagttcaattattataaatttaccaaacagttcagttcgattcaatttt 3257878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 336
Target Start/End: Original strand, 32896611 - 32896713
Alignment:
Q  234 aacacttcgattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttccattcgattcaatttttattccaaactga 333  Q
    |||| |||| |||||||||||||||| ||| |||| ||||  ||| | || ||||||||| ||||||||||  |||| || | |||||||||| || |||    
T  32896611 aacaattcggttcagttcaaaatgcaaacagttcggttcaactcagttatcttaaatttagcaaacagttcagttcggtttagtttttattccgaagtga 32896710  T
Q  334 gcc 336  Q
    |||    
T  32896711 gcc 32896713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 315
Target Start/End: Complemental strand, 27246319 - 27246246
Alignment:
Q  242 gattcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaacagttccattcgattca 315  Q
    |||| |||||||||| || |||||| ||||| ||| ||| |||||||||||| |||||| ||| ||||| ||||    
T  27246319 gatttagttcaaaatacaaacaatttgattcggtttaataattttaaatttatcaaacaattcaattcggttca 27246246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 43955631 - 43955684
Alignment:
Q  244 ttcagttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaa 297  Q
    |||||||| ||||||| ||| ||||||| |||||| | ||||||||||||||||    
T  43955631 ttcagttcgaaatgcaaacagttcgattaagttcagttattttaaatttaacaa 43955684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 10350634 - 10350582
Alignment:
Q  248 gttcaaaatgcagacaattcgattcagttcaatcattttaaatttaacaaaca 300  Q
    ||||| || ||| ||| ||| |||||||||||| |||||||||||||||||||    
T  10350634 gttcagaaagcaaacagttcaattcagttcaattattttaaatttaacaaaca 10350582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University