View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7317_low_9 (Length: 495)
Name: NF7317_low_9
Description: NF7317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7317_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 478
Target Start/End: Complemental strand, 12120205 - 12119752
Alignment:
| Q |
16 |
acatcagggatacctggaaatttttcctcctgcctcctaatatccccaaggctagaattccccccgacattagaatcattgaccaattttcggtgggaag |
115 |
Q |
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| T |
12120205 |
acatgagggatacctggaaatttttcctcctgcctcctaatatccccaaggctagaattcccctcaacattagaatcattgaccaatttttggtgggaag |
12120106 |
T |
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| Q |
116 |
cagagttcgagcaaagaaagcaccaggttgacaaggtggagcgagaccttccctcaatttgagtcttacctcccttgtaaactctcattctctttgacta |
215 |
Q |
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| T |
12120105 |
cagagttcgagcaaagaaagcaccaagtcgacaaggtggagcgagaccttccctcaatttgagtcttacctcccttgtaaactctcattctctttgacta |
12120006 |
T |
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| Q |
216 |
aggtccataggaactcgaagaatcctgggttgttttcccaccttgctaaaaggagtggtcaaaatcgatgaagagaatcacacaagtgctctggaactag |
315 |
Q |
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| T |
12120005 |
aggtccataggaactcgaagaatcctgggttgttttctcaccttgctaaaaggagtggtcagaatcggtgaaga---------tattactctggaaccag |
12119915 |
T |
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| Q |
316 |
acgggcatgtgccttcttggacttactgaaggcgagacttgacatttttcctgcaaaaagaaagggaaagacatgactcgcagagaaaaagataaagtgc |
415 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12119914 |
acgggcatgtgccttcttggacttacttaaggcgagacttgacattttttctgcaaaaagaaagggaaagacatgacccgcagagaaaaagataaagtgc |
12119815 |
T |
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| Q |
416 |
aaagtacatataacatgtacatggaagaagtaggattgttcgcactccggttggtgttgttcc |
478 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12119814 |
aaagtacatataacatgtacatggaagaagtaagattgttcgcactccggttggtgttgttcc |
12119752 |
T |
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