View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7318_high_10 (Length: 350)
Name: NF7318_high_10
Description: NF7318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7318_high_10 |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 9789236 - 9789571
Alignment:
| Q |
13 |
aatattcgtatttgttaatataactcttgtacacttctgattgacgtgttgaatatattcatatatattgcatttagtagtattaaatattcttaatata |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9789236 |
aatattcgtatttgttaatataactcttgtacacttctgattgacgtgttgaatatattcatatatattgcatttagtagtattaaatattcttaatata |
9789335 |
T |
|
| Q |
113 |
catacttacgatgttgacatgttgtattactttgactttgatttagttgattttgggtcatatatcatatatatagcaaacatatgtcagacatgaataa |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9789336 |
catacttacgatgttgacatgttgtattactttgactttgatttagttgattttgggtcatatatc--atatatagcaaacatatgtcagacatgaataa |
9789433 |
T |
|
| Q |
213 |
aggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaacnnnnnnngaaaacagaagtgcatagaatactaatttga |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
9789434 |
aggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaacaaaaaaagaaaacagaagtgcatagaatattaatttga |
9789533 |
T |
|
| Q |
313 |
taacatgattcaacaaaatcgaaaagaaaaaacaaaca |
350 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
9789534 |
taacatgattcaacaaaatcgaaaagaaaaaacaaaca |
9789571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 73 - 350
Target Start/End: Complemental strand, 3587164 - 3586894
Alignment:
| Q |
73 |
atatatattgcatttagtagtattaaatattcttaatatacatacttacgatgttgacatgttgtattactttgactttgatttagttgattttgggtca |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||| | || |
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| T |
3587164 |
atatatattgcatttagtagtattaaatattcttaatatacatacttacgaggttgacatgtt---ttactttgactttgatttggttgattttgag-ca |
3587069 |
T |
|
| Q |
173 |
tatatcatatatatagcaaacatatgtcagacatgaataaaggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaa |
272 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3587068 |
tatat---atatatagtaaacatatgtcagacatgaataaaggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaa |
3586972 |
T |
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| Q |
273 |
acnnnnnnngaaaacagaagtgcatagaatactaatttgataacatgattcaacaaaatcgaaaagaaaaaacaaaca |
350 |
Q |
| |
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|| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3586971 |
acaaaaaaagaaaacaaaagtgcatagaatactgatttgataacatgattcaacaaaatcgaaaagaaaaaacaaaca |
3586894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 3587274 - 3587207
Alignment:
| Q |
13 |
aatattcgtatttgttaatataactcttgtacacttctgattgacgtgttgaatatattcatatatat |
80 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3587274 |
aatatttgtatctgttaatataactcttgtacacttctggttgacgtgttgaatatattcatatatat |
3587207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 350
Target Start/End: Complemental strand, 44505074 - 44504742
Alignment:
| Q |
13 |
aatattcgtatttgttaatataactcttgtacacttctgattgacgtgttgaatatattcatatatattgcatttagtagtattaaatattcttaatata |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44505074 |
aatattcgtatttgttaatataactcttgtacacttctggttgacgtgttgaatatattcatatatattgcatttagtagtattaaatattcttaatata |
44504975 |
T |
|
| Q |
113 |
catacttacgatgttgacatgttgtattactttgactttgatttagttgattttgggtcatatatcatatatatagcaaacatatgtcagacatgaataa |
212 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44504974 |
catacttac---gttgacatgttgttttactttgactttgatttagttgattttgagtcatatatc--atatatagcaaacatatgtcagacatgaataa |
44504880 |
T |
|
| Q |
213 |
aggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaacnnnnnnngaaaacagaagtgcatagaatactaatttga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||||||||||||| |||||| |
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| T |
44504879 |
aggaacatgcaacttgcaatcacaaaagcataaaaaagtatggttttaattgaataacaaacaaaaaaagaaaaccgaagtgcatagaataccgatttga |
44504780 |
T |
|
| Q |
313 |
taacatgattcaacaaaatcgaaaagaaaaaacaaaca |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44504779 |
taacatgattcaacaaaatcgaaaagaaaaaacaaaca |
44504742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 10014022 - 10014345
Alignment:
| Q |
13 |
aatattcgtatttgttaatataactcttgtacacttctgattgacgtgttgaatatattcatatatattgcatttagtagtattaaatattcttaatata |
112 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10014022 |
aatattcgtatctgctaatataactcttgtacacttctggttgacgtgttgaatatattcatatatattgcatttagtagtattaaatattgttaatata |
10014121 |
T |
|
| Q |
113 |
catacttacgatgttgacatgttgtattactttgactttgatttagttgattttgggtcatatatcatatatatagcaaacatatgtcagacatgaataa |
212 |
Q |
| |
|
||||||||||| ||||||||||||| |||| ||||||||||||| |||||||||| |||||||||| |||||||| |||||||||||| |||||||||| |
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| T |
10014122 |
catacttacgaggttgacatgttgttttacgttgactttgatttggttgattttgagtcatatatc--atatatagtaaacatatgtcaaacatgaataa |
10014219 |
T |
|
| Q |
213 |
aggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaacnnnnnnngaaaacagaagtgcatagaatactaatttga |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||| ||||||||||| |||||| |
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|
| T |
10014220 |
aggaacatgcaacttgcaatcacaaaagcataataaagtatgatattgattgaataacaaacaaaaaaagaaaacagaagtacatagaatactgatttga |
10014319 |
T |
|
| Q |
313 |
taacatgattcaacaaaatcgaaaag |
338 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
10014320 |
taacatgattcaacaaaattgaaaag |
10014345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 10021163 - 10021486
Alignment:
| Q |
13 |
aatattcgtatttgttaatataactcttgtacacttctgattgacgtgttgaatatattcatatatattgcatttagtagtattaaatattcttaatata |
112 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10021163 |
aatattcgtatctgctaatataactcttgtacacttctggttgacgtgttgaatatattcatatatattgcatttagtagtattaaatattgttaatata |
10021262 |
T |
|
| Q |
113 |
catacttacgatgttgacatgttgtattactttgactttgatttagttgattttgggtcatatatcatatatatagcaaacatatgtcagacatgaataa |
212 |
Q |
| |
|
||||||||||| ||||||||||||| |||| ||||||||||||| |||||||||| |||||||||| |||||||| |||||||||||| |||||||||| |
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|
| T |
10021263 |
catacttacgaggttgacatgttgttttacgttgactttgatttggttgattttgagtcatatatc--atatatagtaaacatatgtcaaacatgaataa |
10021360 |
T |
|
| Q |
213 |
aggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaacnnnnnnngaaaacagaagtgcatagaatactaatttga |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||| ||||||||||| |||||| |
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| T |
10021361 |
aggaacatgcaacttgcaatcacaaaagcataataaagtatgatattgattgaataacaaacaaaaaaagaaaacagaagtacatagaatactgatttga |
10021460 |
T |
|
| Q |
313 |
taacatgattcaacaaaatcgaaaag |
338 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
10021461 |
taacatgattcaacaaaattgaaaag |
10021486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 31681681 - 31681593
Alignment:
| Q |
13 |
aatattcgtatttgttaatataactcttgtacacttctgattgacgtgttgaatatattcatatatattgcatttagtagtattaaata |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31681681 |
aatattcgtatttgttaatataactcttgtgcacttctggttgacgtgttgaatgtattcatatatattgcatttagtagtattaaata |
31681593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 222 - 350
Target Start/End: Complemental strand, 31678753 - 31678626
Alignment:
| Q |
222 |
caacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaacnnnnnnngaaaacagaagtgcata--gaatactaatttgataacatg |
319 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
31678753 |
caacttgcaatcacaaaagcataaaaa-gtatggtattgattgaataacaaaaaaaaaa--aaaacagaagtgcatatagaatactgatttgataacatg |
31678657 |
T |
|
| Q |
320 |
attcaacaaaatcgaaaagaaaaaacaaaca |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
31678656 |
attcaacaaaatcgaaaagaaaaaacaaaca |
31678626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 93 - 230
Target Start/End: Complemental strand, 31681336 - 31681211
Alignment:
| Q |
93 |
tattaaatattcttaatatacatacttacgatgttgacatgttgtattactttgactttgatttagttgattttgggtcatatatcatatatatagcaaa |
192 |
Q |
| |
|
|||||||||||||||||||||||| ||| || ||||||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
31681336 |
tattaaatattcttaatatacatatttatgaggttgacatgttgttttactttgactttgatttggttgattttgagtc---------atatatagcaaa |
31681246 |
T |
|
| Q |
193 |
catatgtcagacatgaataaaggaacatgcaacttgca |
230 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31681245 |
catatgt---acatgaataaaggaacatgcaacttgca |
31681211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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