View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7318_high_11 (Length: 349)
Name: NF7318_high_11
Description: NF7318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7318_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 7141755 - 7141983
Alignment:
| Q |
18 |
cggactcagttattcgcg--tcaacacatagttatcaaagttctatcctaactttttagacttcttaaccggtttctaaatgtattagaactatctcacc |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7141755 |
cggactcagttattcgcggttcaacacatagttatcgaagttctatcgtaacattttagacttcttaaccggtt-ctaaatgtattagaactatctcacc |
7141853 |
T |
|
| Q |
116 |
actcaaaaacactaacatttcctttccgcttt-nnnnnnnnnnnnnnnnctaacatttccttttcggaatttttcacatccaaaggctctaatattgcaa |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7141854 |
actcaaaaacactaacttttcctttccgctttaaaaaagaaaaaaaaaactaacattttcttttcggaatttttcacatcccaaggctctaatattgcaa |
7141953 |
T |
|
| Q |
215 |
aagtctcgaaacaccgcttctaccacaaat |
244 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| |
|
|
| T |
7141954 |
aagtgtcgaaacaccgtttctaccacaaat |
7141983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 5159996 - 5160034
Alignment:
| Q |
294 |
atgcaaggatcattttcattgagcactttggctaatcat |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159996 |
atgcaaggatcattttcattgagcactttggctaatcat |
5160034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 5195638 - 5195676
Alignment:
| Q |
294 |
atgcaaggatcattttcattgagcactttggctaatcat |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5195638 |
atgcaaggatcattttcattgagcactttggctaatcat |
5195676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 5182244 - 5182281
Alignment:
| Q |
294 |
atgcaaggatcattttcattgagcactttggctaatca |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5182244 |
atgcaaggatcattttcattgagcactttggctaatca |
5182281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 5213804 - 5213841
Alignment:
| Q |
294 |
atgcaaggatcattttcattgagcactttggctaatca |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5213804 |
atgcaaggatcattttcattgagcactttggctaatca |
5213841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 4857087 - 4857050
Alignment:
| Q |
294 |
atgcaaggatcattttcattgagcactttggctaatca |
331 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4857087 |
atgcaaggatcattttcattgaccactttggctaatca |
4857050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University