View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7318_high_12 (Length: 338)
Name: NF7318_high_12
Description: NF7318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7318_high_12 |
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| [»] scaffold0003 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 23 - 319
Target Start/End: Complemental strand, 24493776 - 24493480
Alignment:
| Q |
23 |
cacttacatccaatgagattagacgctgtgtttttcggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcacgcc |
122 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24493776 |
cacttacatccaatgagattagacgctgtgtttttaggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcacacc |
24493677 |
T |
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| Q |
123 |
attcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatggtaaaggatgttttgtgaccaacaaatactttttgtttggcttgtgtat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493676 |
attcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatggtaaaggatgttttgtgaccaacaaatactttttgtttggcttgtgtat |
24493577 |
T |
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| Q |
223 |
gttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgtaagcgtg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493576 |
gttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgtaagcgtg |
24493480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 93126 - 92975
Alignment:
| Q |
23 |
cacttacatccaatgagattagacgctgtgtttttcggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcacgcc |
122 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
93126 |
cacttacatccaatgagattagacgctgtgttttttggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcactcc |
93027 |
T |
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| Q |
123 |
attcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatgg |
174 |
Q |
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| T |
93026 |
attcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatgg |
92975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 92951 - 92845
Alignment:
| Q |
213 |
gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92951 |
gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaatattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgt |
92852 |
T |
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| Q |
313 |
aagcgtg |
319 |
Q |
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||||||| |
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| T |
92851 |
aagcgtg |
92845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 146
Target Start/End: Complemental strand, 92976 - 92945
Alignment:
| Q |
115 |
ggcacgccattcagaagaagccattgcttgtg |
146 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
92976 |
ggcacgccattcagaagaagccattgcttgtg |
92945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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