View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7318_high_14 (Length: 246)
Name: NF7318_high_14
Description: NF7318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7318_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 8184360 - 8184255
Alignment:
| Q |
110 |
cccagattatggcatatctcaagttttattgagtatttaatttggccatggccacggccacaaaatgctttatgtgaggattcttatcaggggaaagata |
209 |
Q |
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| T |
8184360 |
cccagattatggcatatctcaaattttattgagtatttaatttggcca------cggccacaatatgctttatgtgaggattcttatcaggggaaatata |
8184267 |
T |
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| Q |
210 |
cttcattaaaat |
221 |
Q |
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|||||||||||| |
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| T |
8184266 |
cttcattaaaat |
8184255 |
T |
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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 8184524 - 8184461
Alignment:
| Q |
1 |
tttggcagcattaatgttagacatggtgaagaaaaccattgtaaaaagtacaaaacaaagagtg |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8184524 |
tttggcagcattaatgttagacatggtgaagaaaaccattgtaaaaagtacaaaacaaagagtg |
8184461 |
T |
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