View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7318_high_4 (Length: 410)
Name: NF7318_high_4
Description: NF7318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7318_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 6 - 392
Target Start/End: Original strand, 3393735 - 3394121
Alignment:
| Q |
6 |
gtcgaagaatataggaacgactcnnnnnnnngtctccatcagaagagcgagttcgtggagacaataataagagtcacaataacgaggagagaagacggta |
105 |
Q |
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| T |
3393735 |
gtcgaagaagataggaacgactcttttttttgtctccatcagaagagcgagttcgtggagacaataataagagtcacaataacgaggagagaacacggta |
3393834 |
T |
|
| Q |
106 |
acaccaaccttacaaccaataattgctttatcgatatgatgaaatagtttgtctcctggtttcatgttcatactgtccaaaaacgatctcactcccatgt |
205 |
Q |
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| T |
3393835 |
acaccaaccttacaaccaataattgctttatcgatatgatgaaatagtttgtctcctggtttcatgttcatactgtccaaaaacgatctcactcccatgt |
3393934 |
T |
|
| Q |
206 |
ttgttaaatctttgtataataaccctgcaacgttcttctttgtgtctatcccacggtggtttatgaaaacttgacatgttggttgaacaattttgcggta |
305 |
Q |
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| T |
3393935 |
ttgttaaatctttgtataataaccctgcaacgttcttctttgtgtctatcccacggtggtttatgaaaacttgacatgttggttgaacaattttgcggta |
3394034 |
T |
|
| Q |
306 |
gaaacgttgcatggcttcttctataagctttgttagtttcttaattgtgtttgtgttttgtattttgcggtatatatagcaatagat |
392 |
Q |
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| T |
3394035 |
gaaacgttgcatggcttcttctataagctttgttagtttcttaattatgtttgtgttttgtattttgcggtatatatagcaatagat |
3394121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 37 - 335
Target Start/End: Original strand, 3387250 - 3387548
Alignment:
| Q |
37 |
gtctccatcagaagagcgagttcgtggagacaataataagagtcacaataacgaggagagaagacggtaacaccaaccttacaaccaataattgctttat |
136 |
Q |
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| T |
3387250 |
gtctccatgagaagagcgagttcatggagacaataataagagtcgcaataattaggagagaagacaacaacaccaaccttacaatcaaaaatggctttgt |
3387349 |
T |
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| Q |
137 |
cgatatgatgaaatagtttgtctcctggtttcatgttcatactgtccaaaaacgatctcactcccatgtttgttaaatctttgtataataaccctgcaac |
236 |
Q |
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|||||| | || |||||||| ||| ||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
3387350 |
cgatattaggactgagtttgtcccctagtttcatgttcttacagtccaaaaacgatctcactcccatacttgttaaatctttgtatagtaaccctgcaac |
3387449 |
T |
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| Q |
237 |
gttcttctttgtgtctatcccacggtggtttatgaaaacttgacatgttggttgaacaattttgcggtagaaacgttgcatggcttcttctataagctt |
335 |
Q |
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| T |
3387450 |
attcttctttgtgtctattccacggtggtttatgaaaacttgacatgttggttgaataattttgcggtagaaatgttgcatggcttcttctataagctt |
3387548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 203
Target Start/End: Complemental strand, 35761698 - 35761535
Alignment:
| Q |
40 |
tccatcagaagagcgagttcgtggagacaataataagagtcacaataacgaggagagaagacggtaacaccaaccttacaaccaataattgctttatcga |
139 |
Q |
| |
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||||| |||||||| || || ||||||||| ||||||||||||||||| ||||| || || | ||||||||| || ||||| | |||| ||||||| | |
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| T |
35761698 |
tccatgagaagagcaagctcatggagacaaaaataagagtcacaataagttggagaaaacacagcaacaccaactttgcaacctagaattcctttatcaa |
35761599 |
T |
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| Q |
140 |
tatgatgaaatagtttgtctcctggtttcatgttcatactgtccaaaaacgatctcactcccat |
203 |
Q |
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|||||| ||| | | ||||| |||||||| ||| | || |||||||| |||||||||||||| |
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| T |
35761598 |
tatgatcaaacaacctatctccaggtttcatattcttgctatccaaaaatgatctcactcccat |
35761535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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