View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7318_high_5 (Length: 378)
Name: NF7318_high_5
Description: NF7318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7318_high_5 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 20 - 359
Target Start/End: Original strand, 14264 - 14603
Alignment:
| Q |
20 |
ctaaactagctcaagaaattctcaaagatcatgatcatgatgtatctagtagacctccatcgtatggtacacaaatattgtcatacaatggcatggatat |
119 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14264 |
ctaaactagctcaagaaattctcaaagatcatgaccatgatgtatctagtagacctccatcatatggtacacaaatattgtcatacaatggcatggatat |
14363 |
T |
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| Q |
120 |
gatattttcaccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttctagcttttctcatgtgaga |
219 |
Q |
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| T |
14364 |
gatattttcaccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccaaaaaaatttctagcttttctcatgtgaga |
14463 |
T |
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| Q |
220 |
aaatctgaggtcaaacaaatgattgaaaaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaagctcta |
319 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14464 |
aaatctgaggtcaagcaaatgattgaaaaaatatctaaccatgttcattcctctgaaatttcaaaccttagtgagatcctaatgtctgtcttaagctcta |
14563 |
T |
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| Q |
320 |
tagtatgtagaattgcttttggaaaaagttatgagcatga |
359 |
Q |
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| T |
14564 |
tagtatgtagaattgcttttggaaaaagttatgagcatga |
14603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 3631821 - 3631482
Alignment:
| Q |
20 |
ctaaactagctcaagaaattctcaaagatcatgatcatgatgtatctagtagacctccatcgtatggtacacaaatattgtcatacaatggcatggatat |
119 |
Q |
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| T |
3631821 |
ctaaactagctcaagaaattctcaaagatcatgaccatgatgtatctagtagacctccatcatatggtacacaaatattgtcatacaatggcatggatat |
3631722 |
T |
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| Q |
120 |
gatattttcaccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttctagcttttctcatgtgaga |
219 |
Q |
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| T |
3631721 |
gatattttcaccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccaaaaaaatttctagcttttctcatgtgaga |
3631622 |
T |
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| Q |
220 |
aaatctgaggtcaaacaaatgattgaaaaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaagctcta |
319 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3631621 |
aaatctgaggtcaagcaaatgattgaaaaaatatctaaccatgttcattcctctgaaatttcaaaccttagtgagatcctaatgtctgtcttaagctcta |
3631522 |
T |
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| Q |
320 |
tagtatgtagaattgcttttggaaaaagttatgagcatga |
359 |
Q |
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| T |
3631521 |
tagtatgtagaattgcttttggaaaaagttatgagcatga |
3631482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 3621424 - 3621085
Alignment:
| Q |
20 |
ctaaactagctcaagaaattctcaaagatcatgatcatgatgtatctagtagacctccatcgtatggtacacaaatattgtcatacaatggcatggatat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||| ||||| || ||||| |
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| T |
3621424 |
ctaaactagctcaagaaattctcaaagatcatgatcatgatgtatctagtagacctccatcacatggtccaaaaacattgtcatataatggtatagatat |
3621325 |
T |
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| Q |
120 |
gatattttcaccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttctagcttttctcatgtgaga |
219 |
Q |
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| T |
3621324 |
gatattttcaccatacaatgattgttggagagagataagaaaaatttgtgttgtccatttctttagctccaaaaaaatttctagctttgctcatgtgaga |
3621225 |
T |
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| Q |
220 |
aaatctgaggtcaaacaaatgattgaaaaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaagctcta |
319 |
Q |
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|||||||||||||| | |||||||||||| ||||||| ||||||| ||| | |||| ||||||||||||||| || |||||||||||| ||| |||| |
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| T |
3621224 |
aaatctgaggtcaagctaatgattgaaaagatatctaaccatgtttgttcttccaaaatttcaaaccttagtgaggtcttaatgtctgtctcaagttcta |
3621125 |
T |
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| Q |
320 |
tagtatgtagaattgcttttggaaaaagttatgagcatga |
359 |
Q |
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| T |
3621124 |
ttgtatgtagaattgcttttggaaaaagttatgagcatga |
3621085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 9027370 - 9027422
Alignment:
| Q |
121 |
atattttcaccatacaatgatcattggagagagataagaaaaatttgtattgt |
173 |
Q |
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| T |
9027370 |
atattttcacaatacactgatttttggagagaaataagaaaaatttgtgttgt |
9027422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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