View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7318_low_1 (Length: 572)
Name: NF7318_low_1
Description: NF7318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7318_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 4 - 497
Target Start/End: Complemental strand, 22684883 - 22684389
Alignment:
| Q |
4 |
caaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttatttata |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22684883 |
caaaattaatctccttgttccttttttcttgactttaaattcatgttttatcacatagatgacacattttaacaaatttctgtgttttgttttatttata |
22684784 |
T |
|
| Q |
104 |
ggttgtgactcctttggcaaaaattgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgttatgct |
203 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684783 |
ggttgtgactcctttggcaaaatttgccttaatattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgttatgct |
22684684 |
T |
|
| Q |
204 |
atgtctctttttatcagaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattattactacc |
303 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684683 |
atgtctctttttattaaaacaactttagtgttttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattattactacc |
22684584 |
T |
|
| Q |
304 |
tttgtgcgttgctctattgcacttacacttctgatg-aaagcgtctctggtgtctgacatggatacgacatcgatcaacacatgtgattacgttcaatta |
402 |
Q |
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||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
22684583 |
tttgtgcgttgctctgttgcacttacacttctgatgaaaagtgtctctggtgtctgacatggatacgacatcgatcgatacatgtgattacgttcaatta |
22684484 |
T |
|
| Q |
403 |
actcatattttcaaatttttcaccaatgtcaatgtgtctgtgtcagtgttgatttgccgtgtccttgtttgtggaagtgcttcataggtgcattg |
497 |
Q |
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| T |
22684483 |
actcatattttcaaatttttcacccgtgtcaatgtgtctgtgtcagtgtcgatttgtcgtgtccttgtttgtggaagtgcttcataggtgcattg |
22684389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 36 - 316
Target Start/End: Complemental strand, 22696146 - 22695870
Alignment:
| Q |
36 |
ctttaaattcatgttttatcacatagatgacacattttaacaaatttatgtgttttgttttatttataggttgtgactcctttggcaaaaattgccttaa |
135 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
22696146 |
ctttaaattcatgttttatcacatagatgacaaattttaacaaatttctgtgttttattttacatataggttgtgactcctctggcaaaatatgccttaa |
22696047 |
T |
|
| Q |
136 |
tattattgcctgttgcatcaagcatagaggaacttgtcgtcccttctcctaggctaagatgttatgctatgtctctttttatcagaacaactttagtgtt |
235 |
Q |
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| T |
22696046 |
cattattgcctattgcatcaagcatagaggaactt---gtcccttctcctaggctaagatgttatcctatgtctattctcatcagaacagctttagtggt |
22695950 |
T |
|
| Q |
236 |
ttcaagtttatttgtggccctctcttttccatattttggtaagtattgtccatactattattactacctttgtgcgttgct |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||| |
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| T |
22695949 |
ttcaagtttagttgtggccctctcttttccatattttggtaagttttgt-cataccattattactacctttgtgcattgct |
22695870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 23423220 - 23423271
Alignment:
| Q |
380 |
acacatgtgattacgttcaattaactcatattttcaaatttttcaccaatgtc |
432 |
Q |
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|
| T |
23423220 |
acacatgtgattactttcaattaaatcatttattcaaattttt-accaatgtc |
23423271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 14782856 - 14782896
Alignment:
| Q |
382 |
acatgtgattacgttcaattaactcatattttcaaattttt |
422 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||| |
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| T |
14782856 |
acatgtgattacgttcaattaattcattttttcaaattttt |
14782896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 9198640 - 9198680
Alignment:
| Q |
382 |
acatgtgattacgttcaattaactcatattttcaaattttt |
422 |
Q |
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||||||||||| |||||||||| |||| ||||||||||||| |
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| T |
9198640 |
acatgtgattatgttcaattaattcattttttcaaattttt |
9198680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 422
Target Start/End: Original strand, 10764084 - 10764126
Alignment:
| Q |
380 |
acacatgtgattacgttcaattaactcatattttcaaattttt |
422 |
Q |
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||||||| |||||||||||||||| |||| ||||||||||||| |
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| T |
10764084 |
acacatgcgattacgttcaattaattcattttttcaaattttt |
10764126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 427
Target Start/End: Complemental strand, 26456492 - 26456448
Alignment:
| Q |
382 |
acatgtgattacgttcaattaactcatattttcaaatttttcacca |
427 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||| |||| |
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| T |
26456492 |
acatgtgattgcgttcaattaactcat-ttttcaaatttttaacca |
26456448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 450
Target Start/End: Complemental strand, 14227036 - 14226973
Alignment:
| Q |
386 |
gtgattacgttcaattaactcatattttcaaatttttcaccaatgtcaatgtgtctgtgtcagtg |
450 |
Q |
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||||||| |||||||||| |||| ||||||||||||| | |||||||||||| |||||||||| |
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| T |
14227036 |
gtgattatgttcaattaattcattttttcaaattttt-attgatgtcaatgtgtatgtgtcagtg |
14226973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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