View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7318_low_12 (Length: 338)

Name: NF7318_low_12
Description: NF7318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7318_low_12
NF7318_low_12
[»] chr6 (1 HSPs)
chr6 (23-319)||(24493480-24493776)
[»] scaffold0003 (3 HSPs)
scaffold0003 (23-174)||(92975-93126)
scaffold0003 (213-319)||(92845-92951)
scaffold0003 (115-146)||(92945-92976)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 23 - 319
Target Start/End: Complemental strand, 24493776 - 24493480
Alignment:
Q  23 cacttacatccaatgagattagacgctgtgtttttcggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcacgcc 122  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24493776 cacttacatccaatgagattagacgctgtgtttttaggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcacacc 24493677  T
Q  123 attcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatggtaaaggatgttttgtgaccaacaaatactttttgtttggcttgtgtat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24493676 attcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatggtaaaggatgttttgtgaccaacaaatactttttgtttggcttgtgtat 24493577  T
Q  223 gttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgtaagcgtg 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24493576 gttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgtaagcgtg 24493480  T

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Target: scaffold0003 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 93126 - 92975
Alignment:
Q  23 cacttacatccaatgagattagacgctgtgtttttcggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcacgcc 122  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  93126 cacttacatccaatgagattagacgctgtgttttttggaactagatcccaagtcccctgttgcatcaatgcattaaattctgatgccatggcggcactcc 93027  T
Q  123 attcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatgg 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93026 attcagaagaagccattgcttgtgatacacatgtaggttcaagcgatgatgg 92975  T

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Target: scaffold0003; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 92951 - 92845
Alignment:
Q  213 gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgt 312  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  92951 gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaatattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgt 92852  T
Q  313 aagcgtg 319  Q
    |||||||    
T  92851 aagcgtg 92845  T

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Target: scaffold0003; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 146
Target Start/End: Complemental strand, 92976 - 92945
Alignment:
Q  115 ggcacgccattcagaagaagccattgcttgtg 146  Q
    ||||||||||||||||||||||||||||||||    
T  92976 ggcacgccattcagaagaagccattgcttgtg 92945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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