View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7318_low_2 (Length: 513)
Name: NF7318_low_2
Description: NF7318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7318_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 46357706 - 46357204
Alignment:
| Q |
1 |
tgtctcactagttgacatgtttatttccatatttaggaatcattatttgtaaatggaaattaaattctgtttggcatcaaatcttttaaactacttctgt |
100 |
Q |
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| T |
46357706 |
tgtctcactagttgacatgtttatttccatatttaggaatcattatttgtaaatggaaattaaattctgtttggcatcaaatcttttaaactacttctgt |
46357607 |
T |
|
| Q |
101 |
gaactcaataaaaaatgtatttaacgatgctcatattcacctatatatctacatcnnnnnnncttcagaaaaataatattcattcaaatgataaaatttt |
200 |
Q |
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| T |
46357606 |
gaactcaataaaaaatgtatttaacgatgctcatattcacctatatatctacatctttttttcttcagaaaaataatatttattcaaatgataaaatttt |
46357507 |
T |
|
| Q |
201 |
gaatgatcatgtgttgcgacactcccatccacattttaaatcaatattagtaactaataaaagtcaagaataagctaggatacacacaaacagtccaaaa |
300 |
Q |
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| T |
46357506 |
gaatgatcatgtgttgcgacactcccatccacattttaaatcaatattagtaactaat-aaagtcaagaataagctaggatacacacaaacagtccaaaa |
46357408 |
T |
|
| Q |
301 |
accaaggagaaattaacgaatcaaaaccttaatcctaaaaacccaacaaacttctttcaaatacgatcaatgggcaactgctataaaaccatctaccttt |
400 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46357407 |
accaaggagaaattaacaaatcaaaaccttaatcctaaaaacccaacaaacttctttcaaatacgatcaatgggcaactgctataaaaccatctacc-tt |
46357309 |
T |
|
| Q |
401 |
gnnnnnnntaattgatattcattcatataacgtgaccaatacaactacatgttgagaagtcttttgtgacgccgcagacctcttaccccaagacaagttc |
500 |
Q |
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| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
46357308 |
gaaaaaaaaaattgatattcattcatataacgtgaccaatataactacatgttgagaagtcttttgtgacgccgtagacctcttaccccaagacaaattc |
46357209 |
T |
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| Q |
501 |
atctc |
505 |
Q |
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||||| |
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| T |
46357208 |
atctc |
46357204 |
T |
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