View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7318_low_3 (Length: 469)
Name: NF7318_low_3
Description: NF7318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7318_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 193 - 465
Target Start/End: Original strand, 8448727 - 8449018
Alignment:
| Q |
193 |
tgagaggttaataaacaagtaattagagtcaagtattgatgaacttcttatagtatatttgtttgcgagagttcgagtttaatgtcagagtgaaacaatg |
292 |
Q |
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| T |
8448727 |
tgagaggctaataaccaagtaattagagtcaagtattaatgaacttcttatagtataattgtttgtgagagtccgagtttaatgtctgagtgaaacaatg |
8448826 |
T |
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| Q |
293 |
tctttgtca-----gactttactttcagttgaactccagattataacaagggaactttttcctaagatctggaggattcatttaaaaaagttgtttatac |
387 |
Q |
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| T |
8448827 |
tctttatcatactttactttactttcaattgaactccagattataataagggaactttttcctaagatccggagggttcatttaaaaaagttgtttatac |
8448926 |
T |
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| Q |
388 |
ttgcttatgaacta--------------gaattaaattgacaaattttatatattttatggactgcattttttattattcacatttataaat |
465 |
Q |
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| T |
8448927 |
ttgcttataaactaggtgtggcaaaaaggaactaaattgacaaattttatatattttatggactgtattttttattattcacatttataaat |
8449018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 8448585 - 8448662
Alignment:
| Q |
11 |
gagatgaagaagatatacctcgacttcactatggagagattgagatttcagttcgaaactgatgaacaaaattgaagt |
88 |
Q |
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| T |
8448585 |
gagatgaagaagatatacctcgacttcactatggagagattgagattttagttcgaaactgatgaacaaaattgaagt |
8448662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 8236333 - 8236452
Alignment:
| Q |
117 |
acataagaaagatgggtgagattcgttcaatgagatgatgtatttatattactaatgtgacaa-tttatcctcaaaatgagaggttaataaacaagtaat |
215 |
Q |
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| T |
8236333 |
acataagaaagatgggtgagattggttccatgagatgatatatttatagtgctagtgtggcaattttatcctc--aataagaggtttataactaagtaat |
8236430 |
T |
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| Q |
216 |
tagagtcaagtattgatgaact |
237 |
Q |
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| T |
8236431 |
taggctcaagtattaatgaact |
8236452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 8237021 - 8237067
Alignment:
| Q |
418 |
ttttatatattttatggactgcattttttattattcacatttataaa |
464 |
Q |
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| T |
8237021 |
ttttatatattttctggactatatttattattattcacatttataaa |
8237067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 8236211 - 8236264
Alignment:
| Q |
19 |
gaagatatacctcgacttcactatggagagattgagatttcagttcgaaactga |
72 |
Q |
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| T |
8236211 |
gaagatatacctcaactttgcttgggagagattgagattttagttcgaaactga |
8236264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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