View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7318_low_6 (Length: 376)
Name: NF7318_low_6
Description: NF7318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7318_low_6 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 24493503 - 24493177
Alignment:
| Q |
1 |
gtttgtgatgaggatgtaagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggttgggttgatggaggtgtggttgaattatgga |
100 |
Q |
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| T |
24493503 |
gtttgtgatgaggatgtaagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggttgggttgatggaggtgtggttgaattatgga |
24493404 |
T |
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| Q |
101 |
ttatggtttctgaggttctaggctgatgtgggtgggccaagatattagggagtgggagccacggatgttgggaagtgggcagtaatggaggtgaggtttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24493403 |
ttatggtttctgaggttctaggctgatgtgggtgggaaaagatattagggagtgggagccacggatgttgggaagtgagcagtaatggaggtgaggtttg |
24493304 |
T |
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| Q |
201 |
ggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatgtaagagtga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24493303 |
ggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatataagagtga |
24493204 |
T |
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| Q |
301 |
tattgtgtagaataaccaaggaaaaca |
327 |
Q |
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||||||||||||||||||||||||||| |
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| T |
24493203 |
tattgtgtagaataaccaaggaaaaca |
24493177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 92868 - 92542
Alignment:
| Q |
1 |
gtttgtgatgaggatgtaagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggttgggttgatggaggtgtggttgaattatgga |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
92868 |
gtttgtgatgaggatgtaagcgtgagtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggtttggttgatggaggtgtggttgaattatgga |
92769 |
T |
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| Q |
101 |
ttatggtttctgaggttctaggctgatgtgggtgggccaagatattagggagtgggagccacggatgttgggaagtgggcagtaatggaggtgaggtttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
92768 |
ttatggtttctgaggttctaggctgatgtgggtgggttaagatattagggagtgggagccacggatgttggggagtgggcagtaatggaggtgaggtttg |
92669 |
T |
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| Q |
201 |
ggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatgtaagagtga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
92668 |
ggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcgatctagacaaatgtaagagtga |
92569 |
T |
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| Q |
301 |
tattgtgtagaataaccaaggaaaaca |
327 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
92568 |
tattgtgtagaataaccaagtaaaaca |
92542 |
T |
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Back To:
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