View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7318_low_9 (Length: 352)
Name: NF7318_low_9
Description: NF7318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7318_low_9 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 14604 - 14948
Alignment:
| Q |
1 |
agggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14604 |
agggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggatt |
14703 |
T |
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| Q |
101 |
gataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14704 |
gataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatc |
14803 |
T |
|
| Q |
201 |
ggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14804 |
ggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatc |
14903 |
T |
|
| Q |
301 |
cgtccttatggtatgttccaaacactatttttattatattcttcg |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14904 |
cgtccttatggtatgttccaaacactatttttattatattgttcg |
14948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 3631481 - 3631137
Alignment:
| Q |
1 |
agggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3631481 |
agggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggatt |
3631382 |
T |
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| Q |
101 |
gataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3631381 |
gataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatc |
3631282 |
T |
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| Q |
201 |
ggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3631281 |
ggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatc |
3631182 |
T |
|
| Q |
301 |
cgtccttatggtatgttccaaacactatttttattatattcttcg |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3631181 |
cgtccttatggtatgttccaaacactatttttattatattgttcg |
3631137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 3621084 - 3620767
Alignment:
| Q |
1 |
agggggtgagaaaagcaggttccataatttacttcatgagacagaagctattttcctttccttctttgtttcagatcatattccttttatggggtggatt |
100 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| || |
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| T |
3621084 |
agggggtgagaaaagcaggttccatggtttacttaatgagacacaagctattttcctttccttttttgtttcagattatattccttttatggggtgggtt |
3620985 |
T |
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| Q |
101 |
gataaactcactggggcaaatgctcgtgttgacaagactttcaaggctttggatgagtttcttgaacaagtccttcaagaacatctcaatcctaataatc |
200 |
Q |
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||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| |
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| T |
3620984 |
gataaactcacaggggcaattgctcgtgttgacaacactttcaaggctttggatgagttctttgaacaagtcctcaaggaacatctcaatcctaataata |
3620885 |
T |
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| Q |
201 |
ggaagaaagatgaagaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaatgatcacatcaaatc |
300 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
3620884 |
ggaaaaaagatgatgaagagaaggatatagttgacgtgttacttgagttaaagaatcagggtcgtctctcaattgatctcaccaataatcacatcaaagc |
3620785 |
T |
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| Q |
301 |
cgtccttatggtatgttc |
318 |
Q |
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|||| ||||||||||||| |
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| T |
3620784 |
cgtcgttatggtatgttc |
3620767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 9401208 - 9401162
Alignment:
| Q |
62 |
ttctttgtttcagatcatattccttttatggggtggattgataaact |
108 |
Q |
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||||||||||| ||| ||||||| |||||||| |||||||||||||| |
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| T |
9401208 |
ttctttgtttctgattatattccatttatgggttggattgataaact |
9401162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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