View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7319_high_1 (Length: 648)
Name: NF7319_high_1
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 451
Target Start/End: Original strand, 25633365 - 25633788
Alignment:
| Q |
13 |
aatattaggaaaccagaaaaatgtatggaaaagtattattctcattaatgaagt--atctgttacagcaagtatatatagacatatgtttgtgtacatta |
110 |
Q |
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| T |
25633365 |
aatattaggaaaccagaaaaatgaatggagaagtattattctcattgatgaagtgtatctgttacagcaagtatatatagacatatgtttgtgtacatta |
25633464 |
T |
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| Q |
111 |
attaagctatcatatgctatagtgtagctaagcactcttagatctagttgcttaggctgcaagtaatgattaacaa-taatgttaccgacttctttatct |
209 |
Q |
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| T |
25633465 |
attaagctatcatatactatagtgtagctaagtactcttagatctagttgcttaggctgcaagtaatgattaacaactaatgttaccgacttctttatct |
25633564 |
T |
|
| Q |
210 |
ttatcatctaataatatattctggatataattaattgattctgaaatttagatatttgtttattaattctttaatgtttttagtttatgtgtctcactgt |
309 |
Q |
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| T |
25633565 |
ttatcatctaataatatattctggatataattaattgattctgaaatttagatatttgtttattaattctttaatgtttttagtttatgtgtctcactgt |
25633664 |
T |
|
| Q |
310 |
gtttaataacattcccaattattataacactccaattgttgatgtggacttagttttcctttggcttttccatgtaatttaatgcagcaaattgattctg |
409 |
Q |
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| T |
25633665 |
gttta------------------ataacactccaattgttaatgtggacttagttttcctttggtttttccatgtaatttaatgcagcaaattgattctg |
25633746 |
T |
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| Q |
410 |
aactgtttgtgcctcctcggcctcctatttacttcggtgacg |
451 |
Q |
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| T |
25633747 |
aactgtttgtgcctcctcggcctcctatttacctcggtgacg |
25633788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 542 - 632
Target Start/End: Original strand, 25633835 - 25633927
Alignment:
| Q |
542 |
gcatatttctctgaaaactattctggtatataagctgaaacaccaaagaaatgatatat--acataaaatgacgagtttcttgtgaaaaatgt |
632 |
Q |
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| T |
25633835 |
gcatatttctctgaaaactattctggtatataagctgaaacaccaaagaaatgatatatacacataaaatgacgagtttcttgtgaaaaatgt |
25633927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 28669485 - 28669586
Alignment:
| Q |
72 |
ttacagcaagtatatatagaca-tatgtttgtgtacattaattaagctatcatatgctatagtgtagctaagcactcttagatctagttgcttaggctgc |
170 |
Q |
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| T |
28669485 |
ttacagcaagtatatatagacagaatgcttgtctac----attaagctatcatgtgttatagtgtagctaattactctgcga-ctagttgcttagactgc |
28669579 |
T |
|
| Q |
171 |
aagtaat |
177 |
Q |
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||||||| |
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| T |
28669580 |
aagtaat |
28669586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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