View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7319_high_11 (Length: 373)

Name: NF7319_high_11
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7319_high_11
NF7319_high_11
[»] chr3 (15 HSPs)
chr3 (18-211)||(8260709-8260902)
chr3 (21-211)||(8265675-8265866)
chr3 (21-211)||(8258602-8258796)
chr3 (276-362)||(8260558-8260644)
chr3 (114-205)||(8350129-8350220)
chr3 (276-338)||(8350014-8350076)
chr3 (114-211)||(8352867-8352964)
chr3 (276-335)||(8258478-8258537)
chr3 (276-335)||(8265551-8265610)
chr3 (134-205)||(8252975-8253046)
chr3 (280-350)||(8334002-8334073)
chr3 (276-317)||(8352761-8352802)
chr3 (137-209)||(8356436-8356508)
chr3 (276-331)||(8252867-8252922)
chr3 (137-209)||(8360609-8360681)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 8260902 - 8260709
Alignment:
Q  18 atatctataaatagatcaagttaactacatgaagttcaacctacaactaaatcatttcagcttttcacacttccataaacagaaaaccctcttcaaagtg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  8260902 atatctataaatagatcaagttaactacatgaagttcaacctacaactaaatcatttcagctttccacacttacataaacagaaaaccctcttcaaagtg 8260803  T
Q  118 caaattaaatcactttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatgat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260802 caaattaaatcactttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatgat 8260709  T

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Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 8265866 - 8265675
Alignment:
Q  21 tctataaatagatcaagttaactacatgaagttcaacctacaactaaatcatttcagcttttcacacttccataaacagaaaaccctcttcaaagtgcaa 120  Q
    ||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||  |||||| |||||||||||||    
T  8265866 tctataaatggatcaagttaattacatgaagttcaacccacaactaaatcatttcagctttccacacttacataaacaagaaacccacttcaaagtgcaa 8265767  T
Q  121 attaaatcact-ttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatgat 211  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8265766 attaaatcactttttttatggctttgatttcatccttcttaagttgctttggccattctttagactcatcgtctcaagtttctgattatgat 8265675  T

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Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 8258796 - 8258602
Alignment:
Q  21 tctataaatagatcaagtta---actacatgaagttcaacctacaactaaatcatttcagcttttcacacttccataaacagaaaaccctcttcaaagtg 117  Q
    ||||||||||||||||||||   | |||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||||    
T  8258796 tctataaatagatcaagttattaattacatgaagttcaacccacaactaaatcatttcagctttgcacacttacataaacaaaaaacccacttcaaagtg 8258697  T
Q  118 caaattaaatcact-ttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatgat 211  Q
    |||||||||||||| |||| |||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  8258696 caaattaaatcactttttttatggctttgatttcatccattttaagttgctttggccattcttcaaactcatcatctcaagtttctgattatgat 8258602  T

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Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 8260644 - 8260558
Alignment:
Q  276 gagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcatgcagtattaatctgcatccactttctt 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260644 gagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcatgcagtattaatctgcatccactttctt 8260558  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 8350220 - 8350129
Alignment:
Q  114 agtgcaaattaaatcactttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgat 205  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||| | ||||| | ||||||| |||||||||||||||    
T  8350220 agtgcaaattaaatcactttttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgat 8350129  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 8350076 - 8350014
Alignment:
Q  276 gagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcatgca 338  Q
    ||||||||||| |||||||||||||||||||||||| ||||| |||||| |||||||||||||    
T  8350076 gagctccaattatagtttcttatttccctgttaactattatccctcacgcttgtagtcatgca 8350014  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 8352964 - 8352867
Alignment:
Q  114 agtgcaaattaaatcactttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatgat 211  Q
    ||||||||  |||||||||||||||||||||||||||||| || || | ||||||||| | |||||   ||||||| |||||||||| ||||||||||    
T  8352964 agtgcaaaccaaatcactttttgatggctttgatttcatcatttttcaattgctttggtccttcttcgaactcatcttctcaagtttatgattatgat 8352867  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 8258537 - 8258478
Alignment:
Q  276 gagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcat 335  Q
    |||||||||||||||| | | ||||||||  |||||||||||||||||||||||||||||    
T  8258537 gagctccaattgtagtatatcatttccctactaactcttatctctcacgtttgtagtcat 8258478  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 8265610 - 8265551
Alignment:
Q  276 gagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcat 335  Q
    |||||||||||||||| | | ||||||||| ||||||||||||||| |||||||||||||    
T  8265610 gagctccaattgtagtatatcatttccctgctaactcttatctctctcgtttgtagtcat 8265551  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 8253046 - 8252975
Alignment:
Q  134 ttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgat 205  Q
    |||||||||||||||||||| ||||| | ||| ||||| | ||||| | ||||||| |||||||||||||||    
T  8253046 ttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgat 8252975  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 8334073 - 8334002
Alignment:
Q  280 tccaattgtagtttcttatttccctgttaactcttat-ctctcacgtttgtagtcatgcagtattaatctgc 350  Q
    |||||||||||||||||||||||  ||||||| |||| | |||||| ||||||||| || ||||||||||||    
T  8334073 tccaattgtagtttcttatttcctcgttaactattatcccctcacgcttgtagtcaggcggtattaatctgc 8334002  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 8352802 - 8352761
Alignment:
Q  276 gagctccaattgtagtttcttatttccctgttaactcttatc 317  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  8352802 gagcttcaattgtagtttcttatttccctgttaactattatc 8352761  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 8356508 - 8356436
Alignment:
Q  137 atggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatg 209  Q
    ||||||||||||| | | ||||| | ||||||||| |  |||| | |||||||||||||||||||||||||||    
T  8356508 atggctttgattttaccgttcttcaattgctttggtctctcttcaaactcatcatctcaagtttctgattatg 8356436  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 8252922 - 8252867
Alignment:
Q  276 gagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtag 331  Q
    |||||||||||| ||||||||||||| ||||||||  || ||||||||| ||||||    
T  8252922 gagctccaattgcagtttcttatttctctgttaacaattgtctctcacgcttgtag 8252867  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 8360681 - 8360609
Alignment:
Q  137 atggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatg 209  Q
    ||||||||||||||| | ||||| | |||||| || |  |||| | ||| |||||||||||||||||||||||    
T  8360681 atggctttgatttcagctttcttcaattgcttcggtctctcttcaaacttatcatctcaagtttctgattatg 8360609  T

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