View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7319_high_12 (Length: 370)
Name: NF7319_high_12
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 27488249 - 27487906
Alignment:
| Q |
17 |
aagagtataggctcatccttaaatcctaccctccagctctgattcaagaacttttatctcttcttctggcacatgtatctactagaatgcaaagaactct |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27488249 |
aagagtataggctcgtccttaaatcctaccctccagctctgattcaagaagttttatctcttcttcgagcacatgtatctactagaatgcaaagaactct |
27488150 |
T |
|
| Q |
117 |
gtattgcatcacgaagaaaacagaaagattgaaacctctaattgtaataacttgcactgcaagtaactagctcaagttagtttcagttagttacacgagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
27488149 |
gtattgcatcacgaagaaaacagaaagattgaaacctctaattgtaataacttgcactgcaagtaacttgctcaagttagtttcagttagttacaagagt |
27488050 |
T |
|
| Q |
217 |
tattatcctatgctttaggtacatgttaataagcataaggatctagtagcttataaatactagttgtacaagcttattcaatcaatgaaaatcttatttt |
316 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27488049 |
tattattctatgctttaggtacatgttaataagcataaggatctagtagcttataaatactagttgtacaagcttattcaatcaatgaaaatcttatttt |
27487950 |
T |
|
| Q |
317 |
ccatttcatttctaatctcataatactctgcatctttttctctg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27487949 |
ccatttcatttctaatctcataatactctgcatctttttctctg |
27487906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 27480897 - 27480554
Alignment:
| Q |
17 |
aagagtataggctcatccttaaatcctaccctccagctctgattcaagaacttttatctcttcttctggcacatgtatctactagaatgcaaagaactct |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27480897 |
aagagtataggctcgtccttaaatcctaccctccagctctgattcaagaagttttatctcttcttcgagcacatgtatctactagaatgcaaagaactct |
27480798 |
T |
|
| Q |
117 |
gtattgcatcacgaagaaaacagaaagattgaaacctctaattgtaataacttgcactgcaagtaactagctcaagttagtttcagttagttacacgagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| |
|
|
| T |
27480797 |
gtattgcatcacgaagaaaacagaaagattgaaacctctaattgtaataacttgcactgcaagtaacttgctcaagttagtttctgttagttactagagt |
27480698 |
T |
|
| Q |
217 |
tattatcctatgctttaggtacatgttaataagcataaggatctagtagcttataaatactagttgtacaagcttattcaatcaatgaaaatcttatttt |
316 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27480697 |
tattattctatgctttaggtacatgttaataagcataaggatctagtagcttataaatactagttgtacaagcttattcaatcaatgaaaatcttatttt |
27480598 |
T |
|
| Q |
317 |
ccatttcatttctaatctcataatactctgcatctttttctctg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27480597 |
ccatttcatttctaatctcataatactctgcatctttttctctg |
27480554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 25189681 - 25189630
Alignment:
| Q |
201 |
agttagttacacgagttattatcctatgctt-taggtacatgttaataagcat |
252 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
25189681 |
agttagttaca-gagttattatcctatgcttctaggtacatgttagtaagcat |
25189630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 31691313 - 31691192
Alignment:
| Q |
118 |
tattgcatcacgaagaaaacagaaagattgaaacctctaattgtaataacttgcactgcaagtaactagctcaagttagtttc-agttagttacacgagt |
216 |
Q |
| |
|
|||||||||||||||| || |||||||||||| || ||||||||||| |||||| || ||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
31691313 |
tattgcatcacgaagataatagaaagattgaatccactaattgtaat----tgcactacacgtaactagctcaagttagtttttagttagttacaagagt |
31691218 |
T |
|
| Q |
217 |
tattatcctatgctttaggtacatgt |
242 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
31691217 |
tattatcctatgctttaggtacatgt |
31691192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 309
Target Start/End: Complemental strand, 18314533 - 18314341
Alignment:
| Q |
117 |
gtattgcatcacgaagaaaa-cagaaagattgaaacctctaattgtaataacttgcactg-caagtaactagctcaagttagtttcagttagttacacga |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| | || ||||||| |||| ||| ||||||||||||| | |||||| ||||||||||| || |
|
|
| T |
18314533 |
gtattgcatcacgaagaaaaacagaaagatgaaaatcctaaagtgtaatagcttgt-ctgacaagtaactagcttagaatagttt-agttagttaca-ga |
18314437 |
T |
|
| Q |
215 |
gttattatcctatgctt-taggtacatgttaataagcataaggatctagtagcttataaatactagttgtacaagcttattcaatcaatgaaaatc |
309 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||| ||| | || | | |||||||| ||||||||||||| ||||||||||||| |||| |
|
|
| T |
18314436 |
gttattatcctatgcttctaggtacatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaatc |
18314341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 174 - 341
Target Start/End: Original strand, 40280422 - 40280589
Alignment:
| Q |
174 |
tgcaagtaactagctcaagttagtttcagttagttacacgagttattatcctatgctt-taggtacatgttaataagcataaggatctagtagcttataa |
272 |
Q |
| |
|
||||||||||||||| | ||||||| |||||||||| |||| || |||||||||| ||||| ||||||| | ||||| |||| || | ||||||| |
|
|
| T |
40280422 |
tgcaagtaactagcttagattagttttagttagttact-gagtaatgttcctatgcttctaggttcatgttagttagcatgtggatataacaacttataa |
40280520 |
T |
|
| Q |
273 |
atactagttgtacaagcttattcaatcaatgaaaatcttattttccatttcatttctaatctcataata |
341 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| |||| ||||||||||| ||||||||| ||||||||| |
|
|
| T |
40280521 |
atacttgttatacaagcttattcaatcaatgagaatcatattttccattccatttctaaactcataata |
40280589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 9843269 - 9843218
Alignment:
| Q |
201 |
agttagttacacgagttattatcctatgctt-taggtacatgttaataagcat |
252 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
9843269 |
agttagttaca-gagttattatcctatgcttctaggtacatgttagtaagcat |
9843218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 9849395 - 9849344
Alignment:
| Q |
201 |
agttagttacacgagttattatcctatgctt-taggtacatgttaataagcat |
252 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
9849395 |
agttagttaca-gagttattatcctatgcttctaggtacatgttagtaagcat |
9849344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 23871639 - 23871565
Alignment:
| Q |
269 |
ataaatactagttgtacaagcttattcaatcaatgaaaatcttattttccatttcatttctaatctcataatact |
343 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
23871639 |
ataaatacttgttgtacaagcttattcaatcaatgagaatcatattttccattctatttctaaactcataatact |
23871565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 8368420 - 8368280
Alignment:
| Q |
201 |
agttagttacacgagttattatcctatgctt-taggtacatgttaataagcataaggatctagtagcttataaatactagttgtacaagcttattcaatc |
299 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||| || |||| ||| | || | | |||||||| |||||||||||| |||||||| |
|
|
| T |
8368420 |
agttagttaca-gagttattatcctatgcttctaggtacatgttagtaggcatgaggttataacaacctataaataacggttgtacaagctaattcaatc |
8368322 |
T |
|
| Q |
300 |
aatgaaaatcttattttccatttcatttctaatctcataata |
341 |
Q |
| |
|
||||| |||| || |||| ||| |||||| |||||||||| |
|
|
| T |
8368321 |
aatgagaatcataatttctattccatttcacttctcataata |
8368280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University