View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7319_high_13 (Length: 368)

Name: NF7319_high_13
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7319_high_13
NF7319_high_13
[»] chr7 (4 HSPs)
chr7 (1-357)||(7237756-7238109)
chr7 (131-249)||(23113833-23113951)
chr7 (171-268)||(29428946-29429043)
chr7 (297-332)||(23113974-23114009)
[»] chr8 (4 HSPs)
chr8 (74-357)||(22535894-22536169)
chr8 (74-357)||(22531209-22531484)
chr8 (83-357)||(25993815-25994081)
chr8 (221-270)||(36549387-36549436)
[»] chr5 (3 HSPs)
chr5 (77-357)||(13191640-13191912)
chr5 (234-268)||(16597673-16597707)
chr5 (192-252)||(4943585-4943645)
[»] scaffold0097 (1 HSPs)
scaffold0097 (74-357)||(21346-21621)
[»] chr2 (2 HSPs)
chr2 (74-357)||(20717509-20717784)
chr2 (192-268)||(28219076-28219152)
[»] chr6 (3 HSPs)
chr6 (74-357)||(33091079-33091355)
chr6 (171-268)||(19694555-19694652)
chr6 (167-268)||(10871257-10871358)
[»] chr3 (7 HSPs)
chr3 (77-357)||(49368288-49368564)
chr3 (77-357)||(20983186-20983447)
chr3 (179-269)||(14567889-14567979)
chr3 (181-243)||(17575791-17575853)
chr3 (229-269)||(35231809-35231849)
chr3 (192-268)||(42029280-42029356)
chr3 (215-268)||(40024845-40024898)
[»] chr1 (4 HSPs)
chr1 (77-357)||(30190727-30190989)
chr1 (77-332)||(31991576-31991822)
chr1 (171-252)||(19337655-19337736)
chr1 (229-268)||(35306754-35306793)
[»] scaffold0402 (1 HSPs)
scaffold0402 (171-252)||(717-798)
[»] scaffold0039 (1 HSPs)
scaffold0039 (192-268)||(56974-57050)
[»] chr4 (2 HSPs)
chr4 (227-268)||(48084775-48084816)
chr4 (192-268)||(41809887-41809963)


Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 7238109 - 7237756
Alignment:
Q  1 ccaaaaagaggaggaaagaagacgccaagagatctggacggtcacaagcacaaaggtaacgagcgtcaccggtctaaggctctgtttagattgatgggtt 100  Q
    |||||||  |||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  7238109 ccaaaaatgggaggaaagaagacgccaagaggtcttgatggtcacaagcacaaaggtaacgagcgtcaccagtctaaggctctgtttggattgatgggtt 7238010  T
Q  101 gtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatggaacggaatggaacacaatggaatc 199  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7238009 gtagtggaatggaatggaatggaatgtgatggtatataataaaatttcattgtttggattgatgggatgtaaatggaacggaatggaacacaatggaatc 7237910  T
Q  200 aattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaattttactatatat 299  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    |||    
T  7237909 aattccattctatatcactcaatccttcaatttctcattcccccaaatttgggaggtatccaatggaataaaacttgtgtctttaaattttac----tat 7237814  T
Q  300 tctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7237813 tctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 7237756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 23113833 - 23113951
Alignment:
Q  131 ggtatataataaaattccattgttggattgatgggatgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaat 230  Q
    |||||||||| ||||||  |  ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | ||| ||||||||| ||||||    
T  23113833 ggtatataattaaattcgttgtttggattgatgggatgtaaatggaatggaatggaacacaatggaaccaattccattcaataccactcaatctttcaat 23113932  T
Q  231 ttctcattccccccaattt 249  Q
    |||||||| ||||||||||    
T  23113933 ttctcatttcccccaattt 23113951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 268
Target Start/End: Original strand, 29428946 - 29429043
Alignment:
Q  171 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 268  Q
    ||||||| |||||| ||||  |||||||| ||||||||| ||| |||||  || | |||||| |||||||| ||||||||||  ||||||||||||||    
T  29428946 aatggaatggaatgaaacatgatggaatccattccatcccatagcactctctcttccaatttatcattccctccaatttggggtgtatgcaatggaat 29429043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 332
Target Start/End: Original strand, 23113974 - 23114009
Alignment:
Q  297 tattctaccctcattttatttgcctcttcctctact 332  Q
    ||||||||||||||||||||||||||||||||||||    
T  23113974 tattctaccctcattttatttgcctcttcctctact 23114009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 74 - 357
Target Start/End: Complemental strand, 22536169 - 22535894
Alignment:
Q  74 ctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaa 172  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |    
T  22536169 ctaaggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtaca 22536075  T
Q  173 tggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaa 272  Q
    ||||| |||||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  22536074 tggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaa 22535975  T
Q  273 cttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 357  Q
     ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  22535974 tttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 22535894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 74 - 357
Target Start/End: Complemental strand, 22531484 - 22531209
Alignment:
Q  74 ctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaa 172  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |    
T  22531484 ctaaggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtaca 22531390  T
Q  173 tggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaa 272  Q
    ||||| |||||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  22531389 tggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaa 22531290  T
Q  273 cttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 357  Q
     ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| |||||| |||||||||||    
T  22531289 tttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttaaacacgttctt 22531209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 83 - 357
Target Start/End: Complemental strand, 25994081 - 25993815
Alignment:
Q  83 tgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatggaacgga 181  Q
    ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |||||| |||    
T  25994081 tgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtacatggaatgga 25993987  T
Q  182 atggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtct 281  Q
    ||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  25993986 atggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtct 25993887  T
Q  282 ttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 357  Q
    | |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  25993886 tgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 25993815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 36549436 - 36549387
Alignment:
Q  221 atccttcaatttctcattccccccaatttgggaggtatgcaatggaataa 270  Q
    ||||||||||||||| ||||||||||||  ||  ||||||||||||||||    
T  36549436 atccttcaatttctctttccccccaattcagggtgtatgcaatggaataa 36549387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 77 - 357
Target Start/End: Complemental strand, 13191912 - 13191640
Alignment:
Q  77 aggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatgg 175  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| ||||    
T  13191912 aggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtacatgg 13191818  T
Q  176 aacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaactt 275  Q
    || |||||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||    
T  13191817 aatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaattt 13191718  T
Q  276 gtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 357  Q
    ||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  13191717 gtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 13191640  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 16597707 - 16597673
Alignment:
Q  234 tcattccccccaatttgggaggtatgcaatggaat 268  Q
    |||||||||||||||| ||||||||||||||||||    
T  16597707 tcattccccccaatttaggaggtatgcaatggaat 16597673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 4943585 - 4943645
Alignment:
Q  192 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg 252  Q
    |||||| | ||||||||| ||| |||||| |||||||||||  |||||| |||||||||||    
T  4943585 atggaacccattccatccaataccactcattccttcaattttccattccacccaatttggg 4943645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 74 - 357
Target Start/End: Complemental strand, 21621 - 21346
Alignment:
Q  74 ctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaa 172  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |    
T  21621 ctaaggctatgtttggattgatgggttgtagtggaatagaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtaca 21527  T
Q  173 tggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaa 272  Q
    ||||| |||||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  21526 tggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaa 21427  T
Q  273 cttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 357  Q
     ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  21426 tttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 21346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 74 - 357
Target Start/End: Complemental strand, 20717784 - 20717509
Alignment:
Q  74 ctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaa 172  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| |    
T  20717784 ctaaggctatgtttggattgatgggttgtagtggaatagaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtaca 20717690  T
Q  173 tggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaa 272  Q
    ||||| |||||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  20717689 tggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaa 20717590  T
Q  273 cttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 357  Q
     ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  20717589 tttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 20717509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 28219076 - 28219152
Alignment:
Q  192 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 268  Q
    |||||| | ||||||||| ||| |||||| ||||||||||| ||||||| |||||||||||  |||| |||||||||    
T  28219076 atggaacccattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaat 28219152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 161; Significance: 9e-86; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 74 - 357
Target Start/End: Original strand, 33091079 - 33091355
Alignment:
Q  74 ctaaggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatggg-atgtaa 171  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| ||||||||||| |||||     
T  33091079 ctaaggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatggggatgtac 33091173  T
Q  172 atggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaa 271  Q
     ||||| |||||||||  |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  33091174 gtggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaa 33091273  T
Q  272 acttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 357  Q
    | ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  33091274 atttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 33091355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 171 - 268
Target Start/End: Complemental strand, 19694652 - 19694555
Alignment:
Q  171 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 268  Q
    ||||||| ||||||||||| ||||||||| ||||||||| ||  ||   |||||||| |||| |||||||||||||||||||  | ||||||||||||    
T  19694652 aatggaagggaatggaacataatggaatccattccatccaattccatcaaatccttccatttttcattccccccaatttggggtgcatgcaatggaat 19694555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 10871257 - 10871358
Alignment:
Q  167 tgtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatgga 266  Q
    ||||| ||||| | ||||||||| ||||||| | ||| ||||| ||| |||||| || | ||| || ||||||||| |||||||||| ||||||||||||    
T  10871257 tgtaattggaatgaaatggaacataatggaacccatttcatccaataccactcactcttccaaattttcattcccctcaatttgggatgtatgcaatgga 10871356  T
Q  267 at 268  Q
    ||    
T  10871357 at 10871358  T

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Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 77 - 357
Target Start/End: Complemental strand, 49368564 - 49368288
Alignment:
Q  77 aggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgg----gatgtaa 171  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| ||||||||||    ||||||     
T  49368564 aggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatggaatggatgtac 49368470  T
Q  172 atggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaa 271  Q
    |||||| |||||||||  |||||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||    
T  49368469 atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattctccccaatttgggaggtatccaatggaatgaa 49368370  T
Q  272 acttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 357  Q
    | ||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  49368369 atttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 49368288  T

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Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 77 - 357
Target Start/End: Original strand, 20983186 - 20983447
Alignment:
Q  77 aggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatgg 175  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||||||     ||||||||||||||||||||||| ||||||||||||||           
T  20983186 aggctatgtttggattgatgggttgtagtggaatagaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatg------- 20983273  T
Q  176 aacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaactt 275  Q
        ||||||||  ||||| || ||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||| ||    
T  20983274 ----gaatggaatgcaatgaaaccaattccattctataccactcaatccttcaatttcttattccccccaatttgggaggtatccaatgaaatgaaattt 20983369  T
Q  276 gtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 357  Q
    ||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  20983370 gtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 20983447  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 14567889 - 14567979
Alignment:
Q  179 ggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaata 269  Q
    ||||||||| |||||||||   ||||||||| ||| ||  ||| |||||||||| |||||||||||||||||||  |||| ||||||||||    
T  14567889 ggaatggaatacaatggaactcattccatccaataccatccaaaccttcaatttttcattccccccaatttggggtgtatccaatggaata 14567979  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 17575791 - 17575853
Alignment:
Q  181 aatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccc 243  Q
    ||||||||| ||||||||  ||||||||  |||||||||||||||||||||| ||||||||||    
T  17575791 aatggaacataatggaattcattccatctcatatcactcaatccttcaatttttcattccccc 17575853  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 35231849 - 35231809
Alignment:
Q  229 atttctcattccccccaatttgggaggtatgcaatggaata 269  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  35231849 atttttcattccccccaatttgggaggtatgcaatggaata 35231809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 42029356 - 42029280
Alignment:
Q  192 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 268  Q
    |||||| | ||||||||| ||| |||||| ||||||||||| ||||||| |||||||||||  |||| |||||||||    
T  42029356 atggaacccattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaat 42029280  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 40024898 - 40024845
Alignment:
Q  215 cactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 268  Q
    |||||| ||||||||||| ||||||| |||||||||||  |||| |||||||||    
T  40024898 cactcattccttcaatttttcattcctcccaatttggggtgtatccaatggaat 40024845  T

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Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 77 - 357
Target Start/End: Complemental strand, 30190989 - 30190727
Alignment:
Q  77 aggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatgg 175  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||| |||||||||||||||| ||||    
T  30190989 aggctatgtttggattgatgggttgtagtggaatggaatggaatgagatg-----gtatataataaaattccattgtttggattgatgggatgtacatgg 30190895  T
Q  176 aacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaactt 275  Q
    || ||||||||||          ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||    
T  30190894 aatggaatggaac----------caattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaattt 30190805  T
Q  276 gtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttctt 357  Q
    ||||||| |||||||||    |||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||    
T  30190804 gtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttctt 30190727  T

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Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 77 - 332
Target Start/End: Complemental strand, 31991822 - 31991576
Alignment:
Q  77 aggctctgtttagattgatgggttgtagtggaatggaatggaatgagatgtgatggtatataataaaattccattgtt-ggattgatgggatgtaaatgg 175  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  |||| ||  ||||     ||||||||||||| ||||||||| |||||||||||    
T  31991822 aggctctgtttggattgatgggttgtagtggaatggaatggaatgtaatgtcattttata-----aaattccattgtttggattgatgagatgtaaatgg 31991728  T
Q  176 aacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaactt 275  Q
    || ||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||| ||||| |||||||||  |||||    
T  31991727 aatggaatggaacacaatggaatcaattccattctataccactcattccttcaattcctcattccccccaatttggg-ggtatccaatggaatggaactt 31991629  T
Q  276 gtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctact 332  Q
    ||||||| |||| ||||    |||||||||||||||||||||| |||||||||||||    
T  31991628 gtgtcttgaaatattac----tattctaccctcattttatttgtctcttcctctact 31991576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 19337655 - 19337736
Alignment:
Q  171 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg 252  Q
    ||||||| | |||||||||||||||||||||| ||||  |||| |||||||||||||||||| ||| |||||| ||||||||    
T  19337655 aatggaatgaaatggaacacaatggaatcaatgccattatataccactcaatccttcaatttttcaatccccctaatttggg 19337736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 35306793 - 35306754
Alignment:
Q  229 atttctcattccccccaatttgggaggtatgcaatggaat 268  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  35306793 atttttcattccccccaatttgggaggtatgcaatggaat 35306754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 717 - 798
Alignment:
Q  171 aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg 252  Q
    ||||||| | |||||||||||||||||||||| ||||  |||| |||||||||||||||||| ||| |||||| ||||||||    
T  717 aatggaatgaaatggaacacaatggaatcaatgccattatataccactcaatccttcaatttttcaatccccctaatttggg 798  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 56974 - 57050
Alignment:
Q  192 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 268  Q
    |||||| ||||||||||| ||| |||||| |   ||| ||| ||||||||||||| ||||||||||| |||||||||    
T  56974 atggaaccaattccatccaataccactcatttagtcattttttcattccccccaaattgggaggtatccaatggaat 57050  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 48084775 - 48084816
Alignment:
Q  227 caatttctcattccccccaatttgggaggtatgcaatggaat 268  Q
    |||||| ||||||||||||||||||||||||| | |||||||    
T  48084775 caatttttcattccccccaatttgggaggtatacgatggaat 48084816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 41809963 - 41809887
Alignment:
Q  192 atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat 268  Q
    |||||| | |||||||  |||| |||||| || | ||||||  ||||||||||||||||||| |||| |||||||||    
T  41809963 atggaacccattccatgatataccactcattcatccaattttccattccccccaatttgggatgtattcaatggaat 41809887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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