View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7319_high_17 (Length: 344)

Name: NF7319_high_17
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7319_high_17
NF7319_high_17
[»] chr1 (9 HSPs)
chr1 (1-144)||(18932530-18932673)
chr1 (152-296)||(18931971-18932112)
chr1 (161-226)||(8028545-8028610)
chr1 (160-226)||(8050185-8050251)
chr1 (160-227)||(21968017-21968084)
chr1 (253-283)||(16218754-16218784)
chr1 (145-226)||(6012524-6012605)
chr1 (161-226)||(12471744-12471809)
chr1 (148-224)||(13187964-13188040)
[»] chr6 (2 HSPs)
chr6 (160-226)||(31383566-31383632)
chr6 (161-226)||(13846679-13846744)
[»] scaffold0035 (1 HSPs)
scaffold0035 (161-226)||(81963-82028)
[»] chr8 (7 HSPs)
chr8 (161-226)||(415315-415380)
chr8 (161-226)||(1658046-1658111)
chr8 (161-226)||(6335993-6336058)
chr8 (161-226)||(37402066-37402131)
chr8 (161-226)||(14031621-14031686)
chr8 (161-226)||(36802014-36802079)
chr8 (254-282)||(2442503-2442531)
[»] chr7 (14 HSPs)
chr7 (161-226)||(5096375-5096440)
chr7 (161-226)||(24052512-24052577)
chr7 (160-226)||(44549209-44549275)
chr7 (1-144)||(21006387-21006530)
chr7 (172-226)||(35365084-35365138)
chr7 (161-226)||(39753454-39753520)
chr7 (161-226)||(45634116-45634181)
chr7 (167-226)||(13640759-13640818)
chr7 (167-226)||(13703140-13703199)
chr7 (249-283)||(11485712-11485746)
chr7 (249-283)||(35365060-35365094)
chr7 (247-285)||(42181777-42181815)
chr7 (161-226)||(1762482-1762547)
chr7 (249-282)||(13703117-13703150)
[»] chr5 (6 HSPs)
chr5 (161-226)||(27263693-27263758)
chr5 (161-226)||(31172153-31172218)
chr5 (161-226)||(41879659-41879724)
chr5 (161-223)||(6239413-6239475)
chr5 (161-226)||(28394521-28394586)
chr5 (161-226)||(25537111-25537176)
[»] chr4 (6 HSPs)
chr4 (161-226)||(22160494-22160559)
chr4 (161-226)||(23316043-23316108)
chr4 (160-226)||(53450728-53450794)
chr4 (169-226)||(1236081-1236138)
chr4 (161-226)||(26492502-26492567)
chr4 (167-219)||(34461852-34461904)
[»] chr3 (10 HSPs)
chr3 (161-226)||(37980433-37980498)
chr3 (161-226)||(44176875-44176940)
chr3 (161-226)||(44183557-44183622)
chr3 (161-226)||(3806804-3806869)
chr3 (148-221)||(21301622-21301695)
chr3 (161-226)||(37681481-37681545)
chr3 (167-226)||(25440828-25440887)
chr3 (144-218)||(21301352-21301426)
chr3 (161-226)||(5846385-5846450)
chr3 (161-214)||(33706497-33706550)
[»] chr2 (7 HSPs)
chr2 (161-226)||(2383227-2383292)
chr2 (161-224)||(34196340-34196403)
chr2 (173-226)||(14706409-14706462)
chr2 (161-222)||(40324237-40324298)
chr2 (249-283)||(26195103-26195137)
chr2 (161-214)||(36213920-36213973)
chr2 (261-305)||(1071737-1071781)
[»] scaffold0636 (1 HSPs)
scaffold0636 (148-224)||(1406-1482)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 18932673 - 18932530
Alignment:
Q  1 attgattgatttgaatttgagatggattttatagtctctcaggtcaatgatggtcaagactagccactaactctaggaagatcattcatggaaactgcta 100  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||| |||    
T  18932673 attgatggatttgaatttgagatggatgttatagtctctcaggtcaatgatggtcaaaactagccactaaatctaggaagatcattcacggaaactacta 18932574  T
Q  101 agtctttagtggacttggagctgaaagaggtatttataaggtct 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18932573 agtctttagtggacttggagctgaaagaggtatttataaggtct 18932530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 152 - 296
Target Start/End: Complemental strand, 18932112 - 18931971
Alignment:
Q  152 gctaaggtatgtaagttatgaacggtattttatatgaaaatttaacttt--agttaaaattataagtacaaatatttattccttgaaaattatttttact 249  Q
    ||||| || ||||||||||||||||| |||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||        | |    
T  18932112 gctaacgtgtgtaagttatgaacggtgttttatatgaaaatttgactttctagttaaaattataagtacaaatatttattccttgaaaa------aaagt 18932019  T
Q  250 acaaatatttatgacttttaaa-ttgtaacaaaccatgtatatatatt 296  Q
     ||||||||||||||||||||| |||||||||||||| | ||||||||    
T  18932018 ccaaatatttatgacttttaaatttgtaacaaaccatatttatatatt 18931971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 8028545 - 8028610
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  8028545 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 8028610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 8050185 - 8050251
Alignment:
Q  160 atgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    |||||| |||||||||| || |||||||||| ||| | |||| ||||||||||||||||||||||||    
T  8050185 atgtaaattatgaacggcatattatatgaaattttgattttaattaaaattataagtacaaatattt 8050251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 21968084 - 21968017
Alignment:
Q  160 atgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattta 227  Q
    |||||| |||| ||| ||||||||||||||| ||| | |||  ||||||||||||||| |||||||||    
T  21968084 atgtaaattataaactgtattttatatgaaattttgattttgattaaaattataagtataaatattta 21968017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 283
Target Start/End: Original strand, 16218754 - 16218784
Alignment:
Q  253 aatatttatgacttttaaattgtaacaaacc 283  Q
    |||||||||||||||||||||||||||||||    
T  16218754 aatatttatgacttttaaattgtaacaaacc 16218784  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 6012524 - 6012605
Alignment:
Q  145 ttgttgtgctaaggtatgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    |||||||||||| || ||||| |||| |||| |||||||||||||  ||| | |||  ||||||||| ||||| ||||||||    
T  6012524 ttgttgtgctaatgtgtgtaaattattaacgatattttatatgaattttttattttgattaaaattacaagtaaaaatattt 6012605  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 12471809 - 12471744
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| ||||||| |||||||||||||||| ||| | |||   ||||| |||||||||||||||||    
T  12471809 tgtaaattatgaatggtattttatatgaaattttgattttgactaaaactataagtacaaatattt 12471744  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 13187964 - 13188040
Alignment:
Q  148 ttgtgctaaggtatgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatat 224  Q
    ||||| ||| |||||||| ||||||| |||||||||  ||||| ||  | |||  ||||||||||||||||||||||    
T  13187964 ttgtgataacgtatgtaaattatgaatggtattttacgtgaaatttcgattttgattaaaattataagtacaaatat 13188040  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 31383632 - 31383566
Alignment:
Q  160 atgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    |||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  31383632 atgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 31383566  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 13846744 - 13846679
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||| ||||||| ||| | |||  ||||||||||||||||||||||||    
T  13846744 tgtaaattatgaacggtattttgtatgaaatttttattttgattaaaattataagtacaaatattt 13846679  T

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Target: scaffold0035 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 82028 - 81963
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  82028 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 81963  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 415380 - 415315
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  415380 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 415315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 1658111 - 1658046
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  1658111 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 1658046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 6336058 - 6335993
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  6336058 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 6335993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 37402066 - 37402131
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  37402066 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 37402131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 14031621 - 14031686
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||| ||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  14031621 tgtaaattatgaacagtattttatatgaaattttgattttgattaaaattataagtacaaatattt 14031686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 36802079 - 36802014
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| ||||||| |||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  36802079 tgtaaattatgaaaggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 36802014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 282
Target Start/End: Complemental strand, 2442531 - 2442503
Alignment:
Q  254 atatttatgacttttaaattgtaacaaac 282  Q
    |||||||||||||||||||||||||||||    
T  2442531 atatttatgacttttaaattgtaacaaac 2442503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 5096375 - 5096440
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  5096375 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 5096440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 24052512 - 24052577
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  24052512 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 24052577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 44549209 - 44549275
Alignment:
Q  160 atgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    |||||| |||||||| ||||||||||||||| ||||| |||  ||||||||||||||| ||||||||    
T  44549209 atgtaaattatgaactgtattttatatgaaattttaattttgattaaaattataagtataaatattt 44549275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 21006530 - 21006387
Alignment:
Q  1 attgattgatttgaatttgagatggattttatagtctctcaggtcaatgatggtcaagactagccactaactctaggaagatcattcatggaaactgcta 100  Q
    |||||| ||||  |||||| ||| ||| |||||||||   |||||||  ||| ||||||||  || |||| ||||||||||||||| |||| |||| | |    
T  21006530 attgatggattcaaatttgggatagatgttatagtcttgaaggtcaacaatgctcaagactgcccgctaattctaggaagatcattaatggtaacttcaa 21006431  T
Q  101 agtctttagtggacttggagctgaaagaggtatttataaggtct 144  Q
    |||||||  | ||| |||||||||| |||||||  |||||||||    
T  21006430 agtctttgctagacatggagctgaaggaggtatacataaggtct 21006387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 35365138 - 35365084
Alignment:
Q  172 aacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  35365138 aacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 35365084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 39753454 - 39753520
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaacttt-agttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | ||| | | ||||||||||||||||||||||    
T  39753454 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaaattataagtacaaatattt 39753520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 45634116 - 45634181
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||   ||||| |||||||||||||||||    
T  45634116 tgtaaattatgaacggtattttatatgaaattttgattttgaataaaactataagtacaaatattt 45634181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 13640818 - 13640759
Alignment:
Q  167 ttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    |||||||| ||||||||||||||| ||| | | |  ||||||||||||||||||||||||    
T  13640818 ttatgaactgtattttatatgaaattttgaatctgtttaaaattataagtacaaatattt 13640759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 13703199 - 13703140
Alignment:
Q  167 ttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    |||||||  ||||||||||||||| ||| | |||| ||||| ||||||||||||||||||    
T  13703199 ttatgaattgtattttatatgaaattttgattttatttaaatttataagtacaaatattt 13703140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 283
Target Start/End: Complemental strand, 11485746 - 11485712
Alignment:
Q  249 tacaaatatttatgacttttaaattgtaacaaacc 283  Q
    ||||||||||| |||||||||||||||||||||||    
T  11485746 tacaaatatttgtgacttttaaattgtaacaaacc 11485712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 283
Target Start/End: Complemental strand, 35365094 - 35365060
Alignment:
Q  249 tacaaatatttatgacttttaaattgtaacaaacc 283  Q
    ||||||||||| |||||||||||||||||||||||    
T  35365094 tacaaatatttgtgacttttaaattgtaacaaacc 35365060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 285
Target Start/End: Complemental strand, 42181815 - 42181777
Alignment:
Q  247 actacaaatatttatgacttttaaattgtaacaaaccat 285  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  42181815 actacaaatatttgtgatttttaaattgtaacaaaccat 42181777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 1762482 - 1762547
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| ||||||||| |||||||||||||| ||||| |||  | || |||||||||||||| ||||    
T  1762482 tgtaaattatgaacgatattttatatgaaattttaattttgatcaagattataagtacaaacattt 1762547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 282
Target Start/End: Complemental strand, 13703150 - 13703117
Alignment:
Q  249 tacaaatatttatgacttttaaattgtaacaaac 282  Q
    ||||||||||| ||||||||||||||||||||||    
T  13703150 tacaaatatttgtgacttttaaattgtaacaaac 13703117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 27263693 - 27263758
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  27263693 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 27263758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 31172153 - 31172218
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  31172153 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 31172218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 41879659 - 41879724
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  41879659 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 41879724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 6239413 - 6239475
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaata 223  Q
    ||||| |||||||||||||||||| ||||| ||||| |||  |||||||||||||||||||||    
T  6239413 tgtaaattatgaacggtattttatgtgaaattttaattttgtttaaaattataagtacaaata 6239475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 28394521 - 28394586
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||   |||||||||||||||||||||||    
T  28394521 tgtaaattatgaacggtattttatatgaaattttgattttgactaaaattataagtacaaatattt 28394586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 25537176 - 25537111
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| ||||||||  |||||||||| ||||||| | |||  ||||||||||||||||||||||||    
T  25537176 tgtaaattatgaacaatattttatataaaaatttgattttgattaaaattataagtacaaatattt 25537111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 22160559 - 22160494
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  22160559 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 22160494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 23316108 - 23316043
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  23316108 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 23316043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 53450728 - 53450794
Alignment:
Q  160 atgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    |||||| ||||||| |||||||||||||||| ||| | |||   |||||||||||||||||||||||    
T  53450728 atgtaaattatgaagggtattttatatgaaattttgattttgactaaaattataagtacaaatattt 53450794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 1236138 - 1236081
Alignment:
Q  169 atgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    |||||||||||||||| ||||| ||||| |||  ||||||||||||||| ||| ||||    
T  1236138 atgaacggtattttatctgaaattttaattttgtttaaaattataagtagaaacattt 1236081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 26492567 - 26492502
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| ||||||| |||||||||||| ||||||| | |||  ||||||||||||||| | ||||||    
T  26492567 tgtaatttatgaatggtattttatatcaaaatttgattttgattaaaattataagtatatatattt 26492502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 34461852 - 34461904
Alignment:
Q  167 ttatgaacggtattttatatgaaaatttaactttagttaaaattataagtaca 219  Q
    |||||||||||||||||||||||| ||| | |||  |||||| ||||||||||    
T  34461852 ttatgaacggtattttatatgaaattttgattttgattaaaactataagtaca 34461904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 37980498 - 37980433
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  37980498 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 37980433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 44176875 - 44176940
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  44176875 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 44176940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 44183557 - 44183622
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  44183557 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 44183622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 3806869 - 3806804
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| ||||||||| |||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  3806869 tgtaaattatgaacgatattttatatgaaattttgattttgattaaaattataagtacaaatattt 3806804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 21301622 - 21301695
Alignment:
Q  148 ttgtgctaaggtatgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaa 221  Q
    |||||||||  | ||||| |||||||||||||||||||||||| ||| | |||  |||||||||||||||||||    
T  21301622 ttgtgctaacatgtgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaa 21301695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 37681545 - 37681481
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||| ||||||||||||||||||| ||| |||||  ||||||||||||||||||||||||    
T  37681545 tgtaaattataaacggtattttatatgaaa-tttgactttgattaaaattataagtacaaatattt 37681481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 25440828 - 25440887
Alignment:
Q  167 ttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    |||||| ||||||||||||||||| ||||| |||  ||||||||||||| | ||||||||    
T  25440828 ttatgaccggtattttatatgaaattttaattttgattaaaattataaggaaaaatattt 25440887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 21301352 - 21301426
Alignment:
Q  144 tttgttgtgctaaggtatgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtac 218  Q
    ||||||| ||||||  || ||| ||||||||| |||||||||||||| ||| | |||| ||||||| ||||||||    
T  21301352 tttgttgcgctaagacatataaattatgaacgatattttatatgaaattttgattttaattaaaatcataagtac 21301426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 5846450 - 5846385
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| ||||||| |||||||||||||||| ||| | |||  ||||||||| ||||| ||||||||    
T  5846450 tgtaaattatgaatggtattttatatgaaattttgattttgattaaaattacaagtataaatattt 5846385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 33706497 - 33706550
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataa 214  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||    
T  33706497 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataa 33706550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 2383292 - 2383227
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||||||||||||||    
T  2383292 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataagtacaaatattt 2383227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 34196403 - 34196340
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatat 224  Q
    ||||| ||||| |||||||||||||||||| ||| | |||  ||||||||||||||||||||||    
T  34196403 tgtaaattatggacggtattttatatgaaattttgattttgattaaaattataagtacaaatat 34196340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 14706462 - 14706409
Alignment:
Q  173 acggtattttatatgaaaatttaactttagttaaaattataagtacaaatattt 226  Q
    |||||||||||||||||| ||||| |||| |||||||||| |||| ||||||||    
T  14706462 acggtattttatatgaaattttaattttaattaaaattattagtataaatattt 14706409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 40324237 - 40324298
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaat 222  Q
    ||||| |||||||| ||||||||||||||| ||| | |||  ||||||||||||||||||||    
T  40324237 tgtaaattatgaacagtattttatatgaaattttgattttgattaaaattataagtacaaat 40324298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 283
Target Start/End: Complemental strand, 26195137 - 26195103
Alignment:
Q  249 tacaaatatttatgacttttaaattgtaacaaacc 283  Q
    ||||||||||||||||||||||||||||| |||||    
T  26195137 tacaaatatttatgacttttaaattgtaaaaaacc 26195103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 36213973 - 36213920
Alignment:
Q  161 tgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataa 214  Q
    ||||| |||||||||||||||||||||||| ||| | |||  ||||||||||||    
T  36213973 tgtaaattatgaacggtattttatatgaaattttgattttgattaaaattataa 36213920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 1071781 - 1071737
Alignment:
Q  261 tgacttttaaattgtaacaaaccatgtatatatatttgaatgaca 305  Q
    ||||||||||||||||||||| ||||| ||||| ||| |||||||    
T  1071781 tgacttttaaattgtaacaaatcatgtttatatttttcaatgaca 1071737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 1406 - 1482
Alignment:
Q  148 ttgtgctaaggtatgtaagttatgaacggtattttatatgaaaatttaactttagttaaaattataagtacaaatat 224  Q
    ||||||||| || ||||| |||||||||||||||||||| | | ||| | |||| |||||||| |||||| ||||||    
T  1406 ttgtgctaacgtgtgtaaattatgaacggtattttatattatattttgattttaattaaaattttaagtataaatat 1482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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