View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7319_high_22 (Length: 295)

Name: NF7319_high_22
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7319_high_22
NF7319_high_22
[»] chr4 (14 HSPs)
chr4 (1-280)||(42533576-42533848)
chr4 (142-280)||(44432656-44432794)
chr4 (137-280)||(5274266-5274409)
chr4 (142-280)||(22047140-22047278)
chr4 (142-280)||(4839767-4839905)
chr4 (137-280)||(46692769-46692911)
chr4 (137-279)||(55326162-55326304)
chr4 (136-262)||(6639355-6639481)
chr4 (137-266)||(19248428-19248556)
chr4 (137-264)||(26069069-26069195)
chr4 (142-273)||(8894230-8894360)
chr4 (142-254)||(35417446-35417557)
chr4 (142-254)||(40996292-40996404)
chr4 (185-262)||(30219079-30219155)
[»] chr5 (13 HSPs)
chr5 (137-280)||(24835147-24835290)
chr5 (137-280)||(11723906-11724049)
chr5 (137-280)||(30607811-30607954)
chr5 (142-280)||(14343885-14344023)
chr5 (142-280)||(33434000-33434138)
chr5 (142-280)||(7314378-7314516)
chr5 (142-280)||(9403713-9403851)
chr5 (142-280)||(34455587-34455725)
chr5 (137-272)||(11766144-11766279)
chr5 (142-279)||(6269309-6269447)
chr5 (142-280)||(34870300-34870437)
chr5 (147-259)||(30422188-30422299)
chr5 (176-230)||(42748256-42748310)
[»] chr2 (11 HSPs)
chr2 (137-280)||(29223102-29223245)
chr2 (137-280)||(29336401-29336544)
chr2 (142-280)||(8684070-8684209)
chr2 (137-278)||(32522383-32522515)
chr2 (142-280)||(36668470-36668607)
chr2 (137-203)||(29226728-29226794)
chr2 (137-203)||(29340027-29340093)
chr2 (137-221)||(31757713-31757798)
chr2 (144-203)||(29792577-29792636)
chr2 (137-262)||(27256908-27257032)
chr2 (142-221)||(40199502-40199582)
[»] chr1 (12 HSPs)
chr1 (136-280)||(38122667-38122811)
chr1 (142-280)||(16833380-16833518)
chr1 (142-280)||(12168806-12168944)
chr1 (142-280)||(33492826-33492963)
chr1 (145-280)||(13218665-13218800)
chr1 (142-255)||(39453350-39453462)
chr1 (142-260)||(25242410-25242528)
chr1 (142-270)||(13829598-13829725)
chr1 (142-254)||(16129004-16129115)
chr1 (176-255)||(7062711-7062789)
chr1 (176-230)||(13249909-13249963)
chr1 (142-218)||(432869-432945)
[»] chr3 (12 HSPs)
chr3 (137-280)||(3587788-3587931)
chr3 (142-280)||(27031417-27031555)
chr3 (142-271)||(10407589-10407718)
chr3 (136-280)||(4755488-4755632)
chr3 (142-280)||(52045513-52045651)
chr3 (142-280)||(52308623-52308761)
chr3 (132-280)||(7653851-7653998)
chr3 (137-280)||(8614913-8615055)
chr3 (128-276)||(36470063-36470211)
chr3 (142-247)||(11263597-11263703)
chr3 (142-265)||(33247302-33247424)
chr3 (189-221)||(25804553-25804585)
[»] chr8 (15 HSPs)
chr8 (142-280)||(27347440-27347578)
chr8 (137-280)||(27353515-27353658)
chr8 (137-280)||(28926774-28926917)
chr8 (142-272)||(3298195-3298325)
chr8 (142-280)||(22179903-22180041)
chr8 (136-280)||(8743998-8744142)
chr8 (142-280)||(9068797-9068935)
chr8 (137-280)||(36737491-36737633)
chr8 (142-273)||(1606596-1606726)
chr8 (142-213)||(16957901-16957972)
chr8 (137-195)||(28369584-28369642)
chr8 (137-221)||(4435537-4435621)
chr8 (142-254)||(24040006-24040117)
chr8 (142-221)||(21687382-21687462)
chr8 (142-221)||(21691706-21691786)
[»] chr7 (18 HSPs)
chr7 (142-280)||(22817832-22817970)
chr7 (135-280)||(7143044-7143189)
chr7 (136-280)||(23794481-23794625)
chr7 (142-280)||(10346936-10347074)
chr7 (142-272)||(31158914-31159044)
chr7 (137-280)||(2630809-2630951)
chr7 (142-280)||(12183259-12183397)
chr7 (142-280)||(22322514-22322652)
chr7 (137-280)||(19472890-19473033)
chr7 (142-280)||(45501261-45501400)
chr7 (142-280)||(2477074-2477212)
chr7 (137-280)||(2798171-2798314)
chr7 (142-280)||(31878015-31878153)
chr7 (142-222)||(31001376-31001456)
chr7 (151-223)||(8139848-8139920)
chr7 (142-220)||(31665265-31665343)
chr7 (137-230)||(24169396-24169489)
chr7 (137-230)||(20403074-20403168)
[»] chr6 (13 HSPs)
chr6 (142-280)||(26511131-26511269)
chr6 (142-280)||(26516247-26516385)
chr6 (137-280)||(34005893-34006036)
chr6 (142-272)||(3538441-3538571)
chr6 (142-280)||(9934615-9934753)
chr6 (137-280)||(24161855-24161997)
chr6 (145-270)||(26603622-26603746)
chr6 (142-280)||(31131280-31131417)
chr6 (185-280)||(15641761-15641855)
chr6 (142-230)||(2298290-2298378)
chr6 (142-277)||(5671670-5671804)
chr6 (142-277)||(24878410-24878544)
chr6 (176-230)||(18751341-18751395)
[»] scaffold0015 (2 HSPs)
scaffold0015 (137-272)||(174033-174168)
scaffold0015 (137-272)||(185191-185326)
[»] scaffold0002 (1 HSPs)
scaffold0002 (142-280)||(354370-354508)
[»] scaffold1494 (1 HSPs)
scaffold1494 (137-280)||(954-1096)
[»] scaffold0019 (1 HSPs)
scaffold0019 (137-280)||(117261-117404)
[»] scaffold0059 (1 HSPs)
scaffold0059 (142-280)||(17103-17241)
[»] scaffold0014 (1 HSPs)
scaffold0014 (142-228)||(79922-80008)
[»] scaffold0744 (1 HSPs)
scaffold0744 (142-266)||(1851-1974)
[»] scaffold0458 (1 HSPs)
scaffold0458 (142-270)||(10197-10324)
[»] scaffold0871 (1 HSPs)
scaffold0871 (136-219)||(4325-4408)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 42533848 - 42533576
Alignment:
Q  1 gtttgaggcgactagctcaccttgccaggtccggaccaaatcaacggcaaatggaatatgctaagaaatatgacaacacacgaattcacatcttccgcaa 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||    
T  42533848 gtttgaggcgactagctcaccttaccaggtccggaccaaatcaacggcaaatggaatatgctaagaaat-------cacacgaattcacatcttcctcaa 42533756  T
Q  101 tggttttcaacagcaacacaaattcttgcttgatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttg 200  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42533755 tggttttcaacagcaacacagattcttgcttgatgcttgataagtgctcaaaagtaacatatttcatgtgctaacttaggcaaattagtgacttgttttg 42533656  T
Q  201 caagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42533655 caagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctatccattttatg 42533576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 44432794 - 44432656
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44432794 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 44432695  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  44432694 ccatttatgctttacatgtctgattctacccaatttatg 44432656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 5274409 - 5274266
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5274409 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaa 5274310  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    | |||||||||||||||||||||||||||||||| || ||||||    
T  5274309 tattaccatttatgctttacatgcctgattctacgcaatttatg 5274266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 22047140 - 22047278
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||    
T  22047140 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 22047239  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  22047240 ccatttatgctttacatgcctgattctacccaatttatg 22047278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 4839905 - 4839767
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| | |||||    
T  4839905 aagtgctcaaaagtaacatatttcatgtgttaacttaggcgaattagtgatttgttttgcaagttatctgaggaaaagctaccatttgagtgcaatttta 4839806  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  4839805 ccatttatgctttacatgcctgattctacccaatttatg 4839767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 46692911 - 46692769
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||| |||| |||||||||||| |||  ||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46692911 ttgataagtgctcaaa-gtaatatattttatgtgttaatctaggcattttagtgacttgttttgcaagttatctaaggaaaagctatcatttgagtgtat 46692813  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    || |||||||||||||||||||||||||||||||||| ||||||    
T  46692812 ttataccatttatgctttacatgcctgattctacccaatttatg 46692769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 137 - 279
Target Start/End: Original strand, 55326162 - 55326304
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||||||||  |||  |||| |  ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  55326162 ttgataagtgctcaaaagtaacatattttatgtattaatctaggaagtttagtgacttgttctgcaagttatctaaggaaaaactaccatttgagtgtat 55326261  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttat 279  Q
    || ||||||||| |||||||||||||||||||||||| |||||    
T  55326262 ttgtaccatttacgctttacatgcctgattctacccaatttat 55326304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 136 - 262
Target Start/End: Original strand, 6639355 - 6639481
Alignment:
Q  136 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 235  Q
    ||||| |||||||||| ||||| |||||| ||||| ||| |||||||  || ||||||||||||||||||||||||||||||||||||||  |   ||||    
T  6639355 cttgataagtgctcaagagtaatatatttcatgtgttaatttaggcattttggtgacttgttttgcaagttatctaaggaaaagctaccaacttgttgta 6639454  T
Q  236 tttttaccatttatgctttacatgcct 262  Q
     ||||||||||||||||||||||||||    
T  6639455 attttaccatttatgctttacatgcct 6639481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 137 - 266
Target Start/End: Complemental strand, 19248556 - 19248428
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||| |||| |||||||||| |||  ||||||  |||||| ||||||||||||||||||||||||||| ||| || |||  || ||    
T  19248556 ttgataagtgctcaaaagcaacacattttatgtgttaatctaggcactttagtggcttgttttgcaagttatctaaggaaaatctatcaattg-ttgcat 19248458  T
Q  237 ttttaccatttatgctttacatgcctgatt 266  Q
    ||||||||||||||||||||||||||||||    
T  19248457 ttttaccatttatgctttacatgcctgatt 19248428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 137 - 264
Target Start/End: Original strand, 26069069 - 26069195
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctacc-atttgagtgta 235  Q
    |||| ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| ||||||||||||||| |||||||||| | ||  ||||     
T  26069069 ttgataagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaagttatctaagaaaaagctacctaatt--gtgtt 26069166  T
Q  236 tttttaccatttatgctttacatgcctga 264  Q
     ||||||||||||||||||||||||||||    
T  26069167 attttaccatttatgctttacatgcctga 26069195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 8894230 - 8894360
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    |||||||||||| | | |||||| ||||| ||| |||||||  |||||||||||||||||||||||||||||| |||||||| |||||| |||| || |     
T  8894230 aagtgctcaaaactgatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggtaaagctacaatttga-tgtaattatg 8894328  T
Q  242 ccatttatgctttacatgcctgattctaccca 273  Q
    ||||||||||||||  ||||| ||| ||||||    
T  8894329 ccatttatgctttatgtgccttattgtaccca 8894360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 254
Target Start/End: Complemental strand, 35417557 - 35417446
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    |||||||||||||||  || ||| ||||| ||| | |||||  ||||||||||||||||||| |||||||||||||||| | ||||||  |||| ||| |    
T  35417557 aagtgctcaaaagtactatctttcatgtgttaaataaggcattttagtgacttgttttgcaaattatctaaggaaaagcaatcatttg-ttgtaatttga 35417459  T
Q  242 ccatttatgcttt 254  Q
    |||||||||||||    
T  35417458 ccatttatgcttt 35417446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 254
Target Start/End: Complemental strand, 40996404 - 40996292
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttg-caagttatctaaggaaaagctaccatttgagtgtattttt 240  Q
    |||||||||||||||  || ||| ||||| |||  |||| |  |||||||||||||||| |||||||||||||||||||| | ||||| | |||| |||     
T  40996404 aagtgctcaaaagtattatctttcatgtgttaaaataggtattttagtgacttgttttgtcaagttatctaaggaaaagcaatcattt-attgtaatttg 40996306  T
Q  241 accatttatgcttt 254  Q
    ||||||||||||||    
T  40996305 accatttatgcttt 40996292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 30219155 - 30219079
Alignment:
Q  185 ttagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcct 262  Q
    ||||||||||||| |||||||||||||||||||| | | || |||  |||| ||| || |||||||||||||||||||    
T  30219155 ttagtgacttgttctgcaagttatctaaggaaaaacaatcaattg-ttgtaatttcacaatttatgctttacatgcct 30219079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 24835147 - 24835290
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24835147 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 24835246  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  24835247 ttttaccatttatgctttacatgcctgattctacccaatttatg 24835290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 11724049 - 11723906
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  11724049 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 11723950  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  11723949 ttttaccatttatgctttacatgcctgattctacccaatttatg 11723906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 30607954 - 30607811
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30607954 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaa 30607855  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    | ||||||||||||||||||||||||||||||||||| ||||||    
T  30607854 tattaccatttatgctttacatgcctgattctacccaatttatg 30607811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 14343885 - 14344023
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  14343885 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 14343984  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  14343985 ccatttatgctttacatgcctgattctacccaatttatg 14344023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 33434000 - 33434138
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33434000 aagtgcttaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagttaccatttgagtgtattttta 33434099  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  33434100 ccatttatgctttacatgcctgattctacccaatttatg 33434138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 7314378 - 7314516
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  7314378 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 7314477  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  7314478 ccatttatgctttacatgcctgattctaccaaatttatg 7314516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 9403713 - 9403851
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  9403713 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 9403812  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    | |||||||||||||||||||||||||||||| ||||||    
T  9403813 ctatttatgctttacatgcctgattctacccaatttatg 9403851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 34455587 - 34455725
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  34455587 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 34455686  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  34455687 ccatttatgctttacatgcccgattctacccaatttatg 34455725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 137 - 272
Target Start/End: Original strand, 11766144 - 11766279
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |     
T  11766144 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactcgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 11766243  T
Q  237 ttttaccatttatgctttacatgcctgattctaccc 272  Q
    ||||||||||||||||||||||| ||||||||||||    
T  11766244 ttttaccatttatgctttacatgtctgattctaccc 11766279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 6269309 - 6269447
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta-ttttt 240  Q
    ||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  6269309 aagtgctcaaaagtaacatatttcatgtgttaacctaggcaatttagtgacttgttttgcaagttatctaaggaaaatctaccatttgagtgtatttttt 6269408  T
Q  241 accatttatgctttacatgcctgattctacccattttat 279  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  6269409 accatttatgctttacatgtctgattctacccaatttat 6269447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 34870437 - 34870300
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||||||||| |||  ||||||  |||||| ||||||||||||||||||||||||||| ||| || |||  || |||||||    
T  34870437 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtggcttgttttgcaagttatctaaggaaaaactatcaattg-ttgcattttta 34870339  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||| |||||| | |||| ||||||    
T  34870338 ccatttatgctttacatgtctgattttgcccaatttatg 34870300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 30422188 - 30422299
Alignment:
Q  147 ctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatt 246  Q
    ||||||||||| |||||| ||||| ||| |||||||  |||||||||||||||||||||||||||||||||| ||||||||| |  ||| |||| |||||    
T  30422188 ctcaaaagtaatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggaaaaactaccattt-atcgtaattttgccatt 30422286  T
Q  247 tatgctttacatg 259  Q
    |||||||||||||    
T  30422287 tatgctttacatg 30422299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 42748310 - 42748256
Alignment:
Q  176 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 230  Q
    |||||||  ||||| |||||||||||||||||| |||||||||||||| ||||||    
T  42748310 ttaggcactttagttacttgttttgcaagttatttaaggaaaagctacaatttga 42748256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 29223102 - 29223245
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29223102 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 29223201  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  29223202 ttttaccatttatgctttacatgcctgattctacccaatttatg 29223245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 29336401 - 29336544
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29336401 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 29336500  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  29336501 ttttaccatttatgctttacatgcctgattctacccaatttatg 29336544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 8684209 - 8684070
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat-tttt 240  Q
    |||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  8684209 aagtgctcaaaagtaaaatatttcatgtgttaacttaggaaaattagtgacttgttttgcaagttatctaaggaaaagctaccgtttgagtgtatttttt 8684110  T
Q  241 accatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  8684109 accatttatgctttacatacctgattctacccaatttatg 8684070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 137 - 278
Target Start/End: Original strand, 32522383 - 32522515
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||         |||||||||||||||||||||||||||||||||| |||||||||||||    
T  32522383 ttgataagtgctcaaaagtaacatattttatgtgttaatttag---------tgacttgttttgcaagttatctaaggaaaagctatcatttgagtgtat 32522473  T
Q  237 ttttaccatttatgctttacatgcctgattctacccatttta 278  Q
    || |||||||||||||||||||||||||||||||||| ||||    
T  32522474 ttataccatttatgctttacatgcctgattctacccaattta 32522515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 36668607 - 36668470
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||| ||||||||||||||| |||  ||||||  |||||| ||||||||||||||||||||||||||||||| || |||  || |||||||    
T  36668607 aagtgctcaaaagcaacatattttatgtgttaatctaggcattttagtggcttgttttgcaagttatctaaggaaaagctatcaattg-ttgcattttta 36668509  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||||||||||||| | |||| ||||||    
T  36668508 ccatttatgctttacatgcctgattttgcccaatttatg 36668470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 29226728 - 29226794
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 203  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  29226728 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaa 29226794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 29340027 - 29340093
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 203  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  29340027 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaa 29340093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 31757713 - 31757798
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 221  Q
    |||| |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| |||||||||    
T  31757713 ttgataagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 31757798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 29792577 - 29792636
Alignment:
Q  144 gtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 203  Q
    ||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| |||||    
T  29792577 gtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaa 29792636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 262
Target Start/End: Original strand, 27256908 - 27257032
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| ||||||||| | |||| | || ||    
T  27256908 ttgataagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcat 27257006  T
Q  237 ttttaccatttatgctttacatgcct 262  Q
    ||  ||||||||||||| | ||||||    
T  27257007 ttacaccatttatgcttcatatgcct 27257032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 40199502 - 40199582
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 221  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||| ||||||||||||| ||||||| || ||||||    
T  40199502 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgccttgttttgcaagattatctatggcaaagct 40199582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 136 - 280
Target Start/End: Complemental strand, 38122811 - 38122667
Alignment:
Q  136 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 235  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38122811 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 38122712  T
Q  236 tttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
     | ||||||||||||||||||||||||||||||||||| ||||||    
T  38122711 atattaccatttatgctttacatgcctgattctacccaatttatg 38122667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 16833518 - 16833380
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16833518 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgattgtattttta 16833419  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  16833418 ccatttatgctttacatgcctgattctatccaatttatg 16833380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 12168944 - 12168806
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||    
T  12168944 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 12168845  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  12168844 ccatttatgctttacatgcctgattctacccaatttatg 12168806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 33492963 - 33492826
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  33492963 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 33492864  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  33492863 ccatttatgcttt-catgcctgattctacccaatttatg 33492826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 145 - 280
Target Start/End: Complemental strand, 13218800 - 13218665
Alignment:
Q  145 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttacca 244  Q
    ||||||||| |||||||||| ||||| |||  |||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  13218800 tgctcaaaactaacatatttcatgtgttaatctaggtaatttagtgacttgttttgaaagttatctaaggaaaagctaccatttgagtgtatttatacca 13218701  T
Q  245 tttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||||||||||||||||| ||||||    
T  13218700 tttatgctttacatgcctgattctacccaatttatg 13218665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 142 - 255
Target Start/End: Original strand, 39453350 - 39453462
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    |||||||||||||||| |||| ||||||| ||| ||||| |  |||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||     
T  39453350 aagtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttttgcaagttatctaaggaaaaactaccatttg-ttgtaattttg 39453448  T
Q  242 ccatttatgcttta 255  Q
    ||||||||||||||    
T  39453449 ccatttatgcttta 39453462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 260
Target Start/End: Original strand, 25242410 - 25242528
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    |||||||||||| ||||||||| |||||| ||| |||||||  ||| ||||||||| ||||||||||||||||||||||||| |||   |  | ||||||    
T  25242410 aagtgctcaaaactaacatattctatgtgttaatttaggcattttaatgacttgttctgcaagttatctaaggaaaagctactattgttgcattttttta 25242509  T
Q  242 ccatttatgctttacatgc 260  Q
    |||||||||||||| ||||    
T  25242510 ccatttatgctttaaatgc 25242528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 270
Target Start/End: Original strand, 13829598 - 13829725
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||| |||| |||||| ||||| ||| ||| |||  ||||| ||||||  | |||||||||| |||||||||||||| || | |||| |||||    
T  13829598 aagtgctcaaaggtaatatatttcatgtgttaaattatgcattttagtaacttgtcctacaagttatctgaggaaaagctaccaatt-attgtactttta 13829696  T
Q  242 ccatttatgctttacatgcctgattctac 270  Q
    | |||| ||||||||||||||||||||||    
T  13829697 ctatttgtgctttacatgcctgattctac 13829725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 16129004 - 16129115
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||| ||| ||| ||||| |||  ||||||  ||| |||||||||||||||||||||||||||||||| | ||||||  |||| ||| |    
T  16129004 aagtgctcaaaagtaccatctttcatgtgttaaaataggcattttaatgacttgttttgcaagttatctaaggaaaagcaatcatttg-ttgtaatttga 16129102  T
Q  242 ccatttatgcttt 254  Q
    |||||||||||||    
T  16129103 ccatttatgcttt 16129115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 7062711 - 7062789
Alignment:
Q  176 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgcttta 255  Q
    |||||||  ||||| |||||||||||||||||||||| ||||| |||| |||||| || ||   ||||||||||||||||    
T  7062711 ttaggcactttagttacttgttttgcaagttatctaaagaaaaactacaatttga-tgaataaataccatttatgcttta 7062789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 13249963 - 13249909
Alignment:
Q  176 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 230  Q
    |||||||  ||||| ||||||||| |||||||| |||||||||||||| ||||||    
T  13249963 ttaggcactttagttacttgttttacaagttatttaaggaaaagctacaatttga 13249909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 432945 - 432869
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaa 218  Q
    |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| ||||||    
T  432945 aagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaa 432869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 3587788 - 3587931
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  3587788 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 3587887  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  3587888 ttttaccatttatgctttacatgcctgattctacccaatttatg 3587931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 27031555 - 27031417
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  27031555 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 27031456  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  27031455 ccatttatgctttacatgcctgattctacccaatttatg 27031417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 142 - 271
Target Start/End: Complemental strand, 10407718 - 10407589
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10407718 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 10407619  T
Q  242 ccatttatgctttacatgcctgattctacc 271  Q
    ||||||||||||||||||||||||||||||    
T  10407618 ccatttatgctttacatgcctgattctacc 10407589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 136 - 280
Target Start/End: Complemental strand, 4755632 - 4755488
Alignment:
Q  136 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 235  Q
    ||||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4755632 cttgataagtgctcaaaagtaacatatttcatgtgttaaattaggcaaattagtgacttgttttgcaagttatctaaggaaaagttaccatttgagtgta 4755533  T
Q  236 tttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||    
T  4755532 tttttaccatttatgccttacatgcctgattctacccaatttatg 4755488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 52045651 - 52045513
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52045651 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaatttgtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 52045552  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  52045551 ccatttatgctttacatgcctgattctagccaatttatg 52045513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 52308761 - 52308623
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  52308761 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgctttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 52308662  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  52308661 ccatttatgctttacatgtctgattctacccaatttatg 52308623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 132 - 280
Target Start/End: Complemental strand, 7653998 - 7653851
Alignment:
Q  132 gatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgag 231  Q
    |||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653998 gatgattgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgag 7653899  T
Q  232 tgtatttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    || | |||||||||||||||||| |||||||||||||||||| ||||||    
T  7653898 tgcaattttaccatttatgcttt-catgcctgattctacccaatttatg 7653851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 8614913 - 8615055
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |     
T  8614913 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttt-gcaagttatctaaggaaaagctaccatttgagtgcaa 8615011  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  8615012 ttttaccatttatgctttacatgcctgattctacccaatttatg 8615055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 128 - 276
Target Start/End: Complemental strand, 36470211 - 36470063
Alignment:
Q  128 gcttgatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatt 227  Q
    |||||||| |||| ||||||||||||||| ||||||| ||||| |||  ||||||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  36470211 gcttgatgtttgataagtgctcaaaagtaccatatttaatgtgttaatctaggcaatttagtgatttgttttgcaagttatccaaggaaaagctaccatt 36470112  T
Q  228 tgagtgtatttttaccatttatgctttacatgcctgattctacccattt 276  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  36470111 tgagtgtatttataccaattatgctttacatgcctgattctaccaattt 36470063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 11263703 - 11263597
Alignment:
Q  142 aagtgctcaaaa-gtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttt 240  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  11263703 aagtgctcaaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggtaacgctagcatttgagtgtattttt 11263604  T
Q  241 accattt 247  Q
    |||||||    
T  11263603 accattt 11263597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 265
Target Start/End: Original strand, 33247302 - 33247424
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| ||||||||||||||||||||||||| |  |  ||||  |||||    
T  33247302 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaagttatctaaggaaaagctactaaat-tgtgttctttta 33247400  T
Q  242 ccatttatgctttacatgcctgat 265  Q
    ||||||||||||||||||||||||    
T  33247401 ccatttatgctttacatgcctgat 33247424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 25804553 - 25804585
Alignment:
Q  189 tgacttgttttgcaagttatctaaggaaaagct 221  Q
    ||||||||||||||||||||||| |||||||||    
T  25804553 tgacttgttttgcaagttatctatggaaaagct 25804585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 27347440 - 27347578
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27347440 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 27347539  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  27347540 ccatttatgctttacatgcctgattctatccaatttatg 27347578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 27353515 - 27353658
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |     
T  27353515 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctatcatttgagtgcaa 27353614  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  27353615 ttttaccatttatgctttacatgcctgattctacccaatttatg 27353658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 28926917 - 28926774
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |     
T  28926917 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactttttttgcaagttatctaaggaaaagctaccatttgagtgcaa 28926818  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  28926817 ttttaccatttatgctttacatgcctgattctacccaatttatg 28926774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 142 - 272
Target Start/End: Original strand, 3298195 - 3298325
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3298195 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtttattttta 3298294  T
Q  242 ccatttatgctttacatgcctgattctaccc 272  Q
    |||||||||||||||||| ||||||||||||    
T  3298295 ccatttatgctttacatgtctgattctaccc 3298325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 22179903 - 22180041
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  22179903 aagtgctcaaaagtaacatattttatgcgttaacttaggcaaattagtgacttgtttcgcaagttatctaaggaaaatctaccatttgagtgtaatttta 22180002  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  22180003 ccatttatgctttacatgcctgattctactcaatttatg 22180041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 136 - 280
Target Start/End: Complemental strand, 8744142 - 8743998
Alignment:
Q  136 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 235  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8744142 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattattgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 8744043  T
Q  236 tttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
     | |||  |||||||||||||||||||||||||||||| ||||||    
T  8744042 atattattatttatgctttacatgcctgattctacccaatttatg 8743998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 9068935 - 9068797
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  ||||    
T  9068935 aagtgcccaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatccaaggaaaagctaccatttgagtgcaacttta 9068836  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  9068835 ccatttatgctttacatgcctgattctacccaatttatg 9068797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 36737633 - 36737491
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||| ||||||| ||||||||||||| |||  ||||||  || |||||||||| ||||||||||||||||||| |||| || |||  |||||    
T  36737633 ttgataagtgctaaaaagtaccatattttatgtgttaatctaggcattttggtgacttgttctgcaagttatctaaggaaaggctatcaattg-ttgtat 36737535  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
     | |||||||||||||||||||||||||||||||||| ||||||    
T  36737534 ctataccatttatgctttacatgcctgattctacccaatttatg 36737491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 1606596 - 1606726
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    |||||||||||||||| |||||| ||||| ||| |||||||  ||||||||||||| ||||||||||||||| |||||||  || |||  |||| |||||    
T  1606596 aagtgctcaaaagtaatatatttcatgtgttaatttaggcattttagtgacttgttctgcaagttatctaagaaaaagctttcaattg-ttgtactttta 1606694  T
Q  242 ccatttatgctttacatgcctgattctaccca 273  Q
    ||||||||| |||||||| |||||||||||||    
T  1606695 ccatttatgttttacatgtctgattctaccca 1606726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 16957901 - 16957972
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaag 213  Q
    ||||||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||||||    
T  16957901 aagtgctcaaaagtaacatattttatgcgttaatctaggcatattagtgacttgttttgcaagttatctaag 16957972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 28369584 - 28369642
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttg 195  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  28369584 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggtaaattagtgacttg 28369642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 4435621 - 4435537
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagct 221  Q
    |||| |||||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||||||||||| |||||||||    
T  4435621 ttgataagtgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaagttatctatggaaaagct 4435537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 24040006 - 24040117
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    |||||||||||||||  || ||| ||||| |||  ||||||  |||||||||||||||| ||||||| ||||||||||| | ||||||  |||| ||| |    
T  24040006 aagtgctcaaaagtattatctttcatgtgttaaaataggcattttagtgacttgttttgtaagttatataaggaaaagcaatcatttg-ttgtaatttga 24040104  T
Q  242 ccatttatgcttt 254  Q
    |||||||||||||    
T  24040105 ccatttatgcttt 24040117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 21687382 - 21687462
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 221  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| |||||||||    
T  21687382 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 21687462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 21691706 - 21691786
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 221  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| |||||||||    
T  21691706 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 21691786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 22817832 - 22817970
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22817832 aagtgctcaaaagtaacatatttcaggtgttaacttaggcaaaatagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 22817931  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  22817932 ccatttatgctttacatgcctgattctacccaatttatg 22817970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 135 - 280
Target Start/End: Original strand, 7143044 - 7143189
Alignment:
Q  135 gcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgt 234  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7143044 gcttgataagtgctcaaaagtaacatatttcatgtgttaacttaggaaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgt 7143143  T
Q  235 atttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    | | ||||||||||||||||||||||||||||||||||| ||||||    
T  7143144 aatattaccatttatgctttacatgcctgattctacccaatttatg 7143189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 136 - 280
Target Start/End: Original strand, 23794481 - 23794625
Alignment:
Q  136 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 235  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23794481 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgca 23794580  T
Q  236 tttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
     ||||||||||||| ||||||||||||||||||||||| ||||||    
T  23794581 attttaccatttattctttacatgcctgattctacccaatttatg 23794625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 10347074 - 10346936
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  10347074 aagtgctcaaaagtaacatttttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 10346975  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  10346974 ccatttatgctttacatgcctgattctacccaatttatg 10346936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 142 - 272
Target Start/End: Complemental strand, 31159044 - 31158914
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  31159044 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 31158945  T
Q  242 ccatttatgctttacatgcctgattctaccc 272  Q
    |||||||||||||||||||||||||||||||    
T  31158944 ccatttatgctttacatgcctgattctaccc 31158914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 2630809 - 2630951
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  2630809 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 2630908  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  2630909 ttttaccatttatgcttt-catgcctgattctacccaatttatg 2630951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 12183259 - 12183397
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| ||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12183259 aagtgctcaaaagtaacatatttcatgtgttaacttatgtaaattagtgacctgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 12183358  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  12183359 ccatttatgcttcacatgcctgattctacccaatttatg 12183397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 22322652 - 22322514
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22322652 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagcgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 22322553  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||||| ||| |||||||||| ||||||    
T  22322552 ccatttatgctttacatacctaattctacccaatttatg 22322514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 19473033 - 19472890
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  19473033 ttgataagtgcttaaaagtaacatatttcatgtgttaatttaggcaaattagtgacttattttgcaagttatctaaggaaaagctaccttttgagtgtat 19472934  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||| |||||||||| ||||||    
T  19472933 ttttaccatttatgctttacatgcctaattctacccaatttatg 19472890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 45501400 - 45501261
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgactt-gttttgcaagttatctaaggaaaagctaccatttgagtgtattttt 240  Q
    ||||||||||||||||||||||| |||||||||  ||||||| |||||||||| |||||| || |||||||||||||||||| ||||||||||||||| |    
T  45501400 aagtgctcaaaagtaacatatttcatgtgctaatctaggcaatttagtgacttagttttgaaatttatctaaggaaaagctatcatttgagtgtatttat 45501301  T
Q  241 accatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  45501300 accatttatgttttacatgcctgattctacccaatttatg 45501261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 2477074 - 2477212
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||| ||||||||||||||||||||| | |||| ||||||  ||||||||||||||||||| ||||||||| ||||||||| | |||||||||||||||    
T  2477074 aagtgatcaaaagtaacatattttatgcgttaacctaggcattttagtgacttgttttgcaacttatctaagaaaaagctactaattgagtgtattttta 2477173  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||| |||||||||||||||||||| | ||||||    
T  2477174 ccatttatgttttacatgcctgattctacctaatttatg 2477212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 2798314 - 2798171
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||| |||||| |||||||||||||||| |||  ||||||| ||||||||||||| |||||||||||||||||||| | | |||||||||||||    
T  2798314 ttgataagtgttcaaaaataacatattttatgtgttaatctaggcaatttagtgacttgttctgcaagttatctaaggaaaaacaatcatttgagtgtat 2798215  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    || ||||||||||||||||||| |||||||||| ||| ||||||    
T  2798214 ttataccatttatgctttacatacctgattctatccaatttatg 2798171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 31878015 - 31878153
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||| |||  ||| |||||||||||| |||  |||| || |||||||||| |  ||||||||||||| |||||||||| ||||||||||||||| ||    
T  31878015 aagtgcttaaagttaatatattttatgtgttaatataggtaatttagtgacttatcctgcaagttatctagggaaaagctatcatttgagtgtatttata 31878114  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  31878115 ccatttatgctttacatgcctgattctacccaatttatg 31878153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 31001456 - 31001376
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagcta 222  Q
    ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| | ||||||||||||| ||||||||    
T  31001456 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctccaagttatctaagaaaaagcta 31001376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 8139920 - 8139848
Alignment:
Q  151 aaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctac 223  Q
    ||||||| |||||| ||||| ||  |||||||  |||||||||| ||||||| ||||||||||||||||||||    
T  8139920 aaagtaatatatttcatgtgttattttaggcactttagtgacttattttgcaggttatctaaggaaaagctac 8139848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 31665343 - 31665265
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagc 220  Q
    |||||||||||||||| |||||| ||||| |||  || |||    ||||||||||| ||||||||||||||||||||||    
T  31665343 aagtgctcaaaagtaatatatttcatgtgttaaaatatgcattacagtgacttgttatgcaagttatctaaggaaaagc 31665265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 24169489 - 24169396
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 230  Q
    |||| |||||||||||||| | |||||| ||||  ||  |||||||  ||||||| |||||||||||||||  |||||||||| ||| ||||||    
T  24169489 ttgataagtgctcaaaagtgatatatttcatgtattattttaggcactttagtgatttgttttgcaagttacttaaggaaaagttacaatttga 24169396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 20403074 - 20403168
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaa-ggaaaagctaccatttga 230  Q
    |||| |||||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||| |||  ||| ||||||||||| ||||||    
T  20403074 ttgataagtgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaaattacttaagggaaaagctacaatttga 20403168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 8e-61; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 26511269 - 26511131
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  26511269 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtataatttta 26511170  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  26511169 ccatttatgctttacatgcctgattctacccaatttatg 26511131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 26516385 - 26516247
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  26516385 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtataatttta 26516286  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  26516285 ccatttatgctttacatgcctgattctacccaatttatg 26516247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 34005893 - 34006036
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |     
T  34005893 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaatgctaccatttgagtgcaa 34005992  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||    
T  34005993 ttttaccatttatgctttacatgcctgattctatccaatttatg 34006036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 142 - 272
Target Start/End: Original strand, 3538441 - 3538571
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||    
T  3538441 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactcgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 3538540  T
Q  242 ccatttatgctttacatgcctgattctaccc 272  Q
    |||||||||||||||||||||||||||||||    
T  3538541 ccatttatgctttacatgcctgattctaccc 3538571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 9934753 - 9934615
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9934753 aagtgcttaaaagtaacatatttcatgtgttaacttaggtaaattagtgacttgttttgcaagttatctaaggaaaaactaccatttgagtgtattttta 9934654  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  9934653 ccatttatgctttacatgcctgattctatccaatttatg 9934615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 24161997 - 24161855
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| |||||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  24161997 ttgataagtgctcaaaagtaacat--tttatgtgttaacttaggcaaattagagacttgttttgcaagttatataaggaaaagctaccatttgagtgtat 24161900  T
Q  237 -ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
     ||||||||||||||||||||||||||||||||| ||| ||||||    
T  24161899 tttttaccatttatgctttacatgcctgattctatccaatttatg 24161855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 270
Target Start/End: Original strand, 26603622 - 26603746
Alignment:
Q  145 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttacca 244  Q
    ||||||||||| | |||||| ||||| ||| |||||||  ||||||||||||||||||||||||||||||||||  ||||| |||  |||| ||||||||    
T  26603622 tgctcaaaagtgatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggaaaatgtaccaattg-ttgtacttttacca 26603720  T
Q  245 tttatgctttacatgcctgattctac 270  Q
    ||||||||||||||||||||||||||    
T  26603721 tttatgctttacatgcctgattctac 26603746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 31131280 - 31131417
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||| ||||||||||||||||||||| |||  ||||||  |||||||||||||||||||||||||||||||||| ||| || |||  ||||||| ||    
T  31131280 aagtgcttaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttttgcaagttatctaaggaaaatctatcaattg-ttgtatttata 31131378  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||  || || ||||| |||| ||||||    
T  31131379 ccatttatgctttatgtgtctaattctgcccaatttatg 31131417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 185 - 280
Target Start/End: Original strand, 15641761 - 15641855
Alignment:
Q  185 ttagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||  |||| ||||||||||||||||||||||||||||||| | || |||||||    
T  15641761 ttagtgacttgttctgcaagttatctaaggaaaagctaccaattg-ttgtacttttaccatttatgctttacatgcctgattccaacccttttatg 15641855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 2298290 - 2298378
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 230  Q
    ||||| |||||||| | |||||| ||||| ||  |||| ||  |||||||||||||||||||||||||||||||||| |||| ||||||    
T  2298290 aagtgttcaaaagtgatatatttcatgtgttattttagacactttagtgacttgttttgcaagttatctaaggaaaaactacaatttga 2298378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 277
Target Start/End: Complemental strand, 5671804 - 5671670
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| ||||||||| | |||| | || ||||  |    
T  5671804 aagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcatttaca 5671706  T
Q  242 ccatttatgctttacatgcctgattctacccatttt 277  Q
    |||||||||||| | |||||| | ||||||| ||||    
T  5671705 ccatttatgcttcatatgccttactctacccttttt 5671670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 277
Target Start/End: Original strand, 24878410 - 24878544
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    |||||||||||||| | ||||||  | || ||  |||||||  ||||||||||||| | ||||||||||| ||||||||| | |||| | || ||||  |    
T  24878410 aagtgctcaaaagtgatatatttcttatgttagtttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcatttaca 24878508  T
Q  242 ccatttatgctttacatgcctgattctacccatttt 277  Q
    |||||||||||| | |||||| | ||||||| ||||    
T  24878509 ccatttatgcttcatatgccttactctacccttttt 24878544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 18751395 - 18751341
Alignment:
Q  176 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 230  Q
    |||||||  ||||| |||||||||||||||||| ||||||||| |||| ||||||    
T  18751395 ttaggcactttagttacttgttttgcaagttatttaaggaaaaactacaatttga 18751341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 137 - 272
Target Start/End: Original strand, 174033 - 174168
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  174033 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 174132  T
Q  237 ttttaccatttatgctttacatgcctgattctaccc 272  Q
    ||||||||||||||||||||||||||||||||||||    
T  174133 ttttaccatttatgctttacatgcctgattctaccc 174168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 137 - 272
Target Start/End: Original strand, 185191 - 185326
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||| |     
T  185191 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggaaaattaatgacttgttttgcaagttatataaggaaaagctaccatttgagtgcaa 185290  T
Q  237 ttttaccatttatgctttacatgcctgattctaccc 272  Q
    ||||||||||||||||||||||||||||||||||||    
T  185291 ttttaccatttatgctttacatgcctgattctaccc 185326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 354508 - 354370
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  354508 aagtgctcaaaagtaacatatttcatgtgttaacttagacaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 354409  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  354408 ccatttatgctttacatgcctgattctacccaatttatg 354370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 137 - 280
Target Start/End: Original strand, 954 - 1096
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |     
T  954 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttt-gcaagttatctaaggaaaagctaccatttgagtgcaa 1052  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  1053 ttttaccatttatgctttacatgcctgattctacccaatttatg 1096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 117404 - 117261
Alignment:
Q  137 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 236  Q
    |||| ||||||||||||||||||||||| ||||| |||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  117404 ttgataagtgctcaaaagtaacatatttcatgtgttaatctaggcaatttagtgacttgttttgaaagttatctaaggaaaagctaccatttgagtgtgt 117305  T
Q  237 ttttaccatttatgctttacatgcctgattctacccattttatg 280  Q
    || |||||||||||||||||||| ||||||||||||| ||||||    
T  117304 ttataccatttatgctttacatgtctgattctacccaatttatg 117261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 17241 - 17103
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||||||||| |||| |||||   |||||||||||||||||||||||||||||||||||| || |  ||| ||||||| ||    
T  17241 aagtgctcaaaagtaacatattttatgtgttaacctaggcttgttagtgacttgttttgcaagttatctaaggaaaagccactaagtgattgtatttgta 17142  T
Q  242 ccatttatgctttacatgcctgattctacccattttatg 280  Q
    ||||||||||||||| ||| |||||||||||| ||||||    
T  17141 ccatttatgctttacgtgcttgattctacccaatttatg 17103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 80008 - 79922
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccattt 228  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80008 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccattt 79922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 266
Target Start/End: Original strand, 1851 - 1974
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    ||||||||||||||||||||||||||||| ||| |||||||  ||||| ||||||| |||||||||||||||||||||||||||  |  ||||  |||||    
T  1851 aagtgctcaaaagtaacatattttatgtgttaatttaggcattttagttacttgttctgcaagttatctaaggaaaagctaccaaat-tgtgttctttta 1949  T
Q  242 ccatttatgctttacatgcctgatt 266  Q
    |||||||||||||||||||||||||    
T  1950 ccatttatgctttacatgcctgatt 1974  T

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Target: scaffold0458 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 270
Target Start/End: Complemental strand, 10324 - 10197
Alignment:
Q  142 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 241  Q
    |||||||||||||||| |||| ||||||| ||| ||||| |  |||||||||||||||||||||||||||||||||| ||||||||||  |||| ||||     
T  10324 aagtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttttgcaagttatctaaggaaaaactaccatttg-ttgtaattttg 10226  T
Q  242 ccatttatgctttacatgcctgattctac 270  Q
    ||||||||||||||  ||||| |||||||    
T  10225 ccatttatgctttatgtgccttattctac 10197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0871 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0871
Description:

Target: scaffold0871; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 4325 - 4408
Alignment:
Q  136 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaag 219  Q
    ||||| |||||||||||||| | | |||| ||||| || ||||||||  |||||||||  |||| ||||||||||| |||||||    
T  4325 cttgataagtgctcaaaagtgatagatttcatgtgttagcttaggcattttagtgactgattttacaagttatctatggaaaag 4408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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