View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7319_high_3 (Length: 615)
Name: NF7319_high_3
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 133 - 607
Target Start/End: Complemental strand, 38894151 - 38893677
Alignment:
| Q |
133 |
gtggattattttgatgttgaagttattaattaggagcaaggaggttaatagaattacctactcaaattcgatcttgagaatgcaacaatattaaaaaatt |
232 |
Q |
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| T |
38894151 |
gtggattattttgatgttgaagttattaattaggagcaaggaggttaatagaattacctacttaaatccggtcttgagaatgcaacaatattaaaagagt |
38894052 |
T |
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| Q |
233 |
taaagaagacatttatcgatcgtactctagtgatctaaagataatattaatctttgcagtttcacgttgaaatattgatttactaaatcaaaatagaaat |
332 |
Q |
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| T |
38894051 |
taaagaagacatttgtcgatcgtactccagtgatctaaagataatattaatttttacagtttcacgttgaaatattgatttactaaatcaaaatagaaat |
38893952 |
T |
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| Q |
333 |
ttaagtgtatatctcataactttttacactaaggtaaaggtggcaattgagtgctagaggaagattgtaaagttgttaaaaaactattgaagggctgaaa |
432 |
Q |
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| T |
38893951 |
ttaagtgtatatctcataactttttacactaaggtaaaggtggcaattgagtgctagaggaagattgtaaagttgttaaaaaactattgaagggctgaaa |
38893852 |
T |
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| Q |
433 |
ttaagaagatatatatgcatgcaatgcaatgcatattcctttgaatccataaagcagtttcctttaaaaagtactttaannnnnnnnataaagggaaggg |
532 |
Q |
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| T |
38893851 |
ttaagaagatatatatgcatgcaatgcaatgcatattcctttgaatccataaagctgtttcctttaaaaaatgctttaattttttttataaagggaaggg |
38893752 |
T |
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| Q |
533 |
gggtttatggagttgtgggggaaaaggatatataggacaccgcttttggactccattattgctcaagttcatctc |
607 |
Q |
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| T |
38893751 |
ggttttatggagttgtgggggaaaaggatatataggacaccgcttttggactccattattgctcaagttcatctc |
38893677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 38894262 - 38894192
Alignment:
| Q |
19 |
catcaatcgacggatggatttgatttgatcttgtattcatgatggaagtctttaatttctttgttattttc |
89 |
Q |
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| T |
38894262 |
catcaatcgacggatggatttgatttgatcttgtattcatgatgaaagtctttaatttctttgttattttc |
38894192 |
T |
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