View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7319_high_4 (Length: 543)
Name: NF7319_high_4
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 182; Significance: 4e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 6513919 - 6514108
Alignment:
| Q |
19 |
catctaccttagctaagtcattgcctaaatcaagcacattgtatgttatatcaaaaggaaaagtacaacatattcgaccaacaggacctataagagacat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6513919 |
catctaccttagctaagtcattgcctaaatcaagcacattgtatgttatatcaaaaggaaatgtacaacatattcgaccaacaggacctataagagacat |
6514018 |
T |
|
| Q |
119 |
agttacactcttgcagaatgatcaattgatgcagccaaataaactttttgctcatactcctaattgtgaagatttaaacaggtatgatac |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6514019 |
agttacactcttgcagaatgatcaattgatgcagccaaataaactttttgctcatacccctaattgtgaagatttaaacaggtatgatac |
6514108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 375 - 534
Target Start/End: Original strand, 6515023 - 6515182
Alignment:
| Q |
375 |
tgaaccttaaagttttactttactaattatatgatgttgtgtattttcttgtctcattactttataaaggaaaccattcaaagatgcaaacaaagcttgg |
474 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6515023 |
tgaaccttaaagttttactctactaattatatgatgttgtgtattttcttgtctcattactttataaaggaaaccattcaaagatgcaaacaaagcctgg |
6515122 |
T |
|
| Q |
475 |
gaaccattacatgatgtgaaagatgttacactgatgacaccatgtaaatccaatattctt |
534 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6515123 |
gaaccattacatgatatgaaagatgttacactgatgacaccatgtaaatccaatattctt |
6515182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 282 - 366
Target Start/End: Original strand, 6514146 - 6514230
Alignment:
| Q |
282 |
ctcattatcttaaaaaccgtttttcccctccaaattaagtttttatggactttggtccctcgtatcatttttggggtcatttttt |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6514146 |
ctcattatcttaaaaaccgtttttcccctccaaattaagtttttatgaactttggttcctcgtatcatttttggggtcatttttt |
6514230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University