View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7319_high_6 (Length: 515)
Name: NF7319_high_6
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_high_6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 6 - 515
Target Start/End: Original strand, 6554532 - 6555041
Alignment:
| Q |
6 |
gatggacatcataaaggagcttatgattttgtgtatctaccaattgatttcagagtaagtgcttttctcttcctatgtttaatttattttggcattcttt |
105 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6554532 |
gatgaacaccataaaggagcttatgattttgtgtatctaccaattgatttcagagtaagtgcttttctcttcctatgtttaatttattttggcattcttt |
6554631 |
T |
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| Q |
106 |
ttattttagttaattattcacatggaatcaacattgattgcagaacaaatgcaatgttggatatgcattcatcaacatgactagtcccagcttgattgta |
205 |
Q |
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| T |
6554632 |
ttattttagttaattattcacatggaatcaacattgattgcagaacaaatgcaatgttggatatgcattcatcaacatgactagtcccagcttgattgta |
6554731 |
T |
|
| Q |
206 |
ccattctatcaggttagactcagaaaatgataatgattgtgcctaaaattaatcacatacatcagacacacatgccatgtatcgatagactaaagcctgt |
305 |
Q |
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| T |
6554732 |
ccattctatcaggttagactcagaaaatgataatgattgcggctaaaattaatcacatacatcagacacacatgccatgtatcgatggactaaagcctgt |
6554831 |
T |
|
| Q |
306 |
gatgcaattcttgcagggtttcaacgggaagaaatgggagaaattcaatagtgagaaagtggcatcactcgcatatgctcgcatacaaggaaaagcagcc |
405 |
Q |
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| T |
6554832 |
gatgcaattcttgcagggtttcaacgggaagaaatgggagaaattcaatagtgagaaagtggcatcactcgcatatgctcgcatacaaggaaaagcagcc |
6554931 |
T |
|
| Q |
406 |
ctcgttgctcacttccagaattcaagcttaatgaatgaggataagcgctgcaggcctatcctcatcgacactgatggtccaaatgctggtgatcaggtat |
505 |
Q |
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| T |
6554932 |
ctcgttgctcacttccagaattcaagcttaatgaatgaggataagcgctgcaggcctatcctcatcgacactgatggtccaaatgctggtgatcaggtat |
6555031 |
T |
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| Q |
506 |
aaattttctt |
515 |
Q |
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|||||||||| |
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| T |
6555032 |
aaattttctt |
6555041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 25 - 511
Target Start/End: Complemental strand, 49058014 - 49057518
Alignment:
| Q |
25 |
cttatgattttgtgtatctaccaattgatttcagagtaagtgcttttc----------tcttcctatgtttaatttattttggcattctttttattt--t |
112 |
Q |
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| T |
49058014 |
cttatgactttgtgtatctaccaattgatttcagagtacgtgttttttatcttttttatctttaaatgtttaatttattttggaactccttttatttgtt |
49057915 |
T |
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| Q |
113 |
agttaattattcacatggaatcaacattgattgcagaacaaatgcaatgttggatatgcattcatcaacatgactagtcccagcttgattgtaccattct |
212 |
Q |
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| T |
49057914 |
tcttaattattaacattgaatcaacattgattgcagaacaaatgcaatgctggatatgcattcatcaacatgactagtcctagcttgattatacctttct |
49057815 |
T |
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| Q |
213 |
atcaggttagactcagaaaatgataatgat-tgtgcctaaaattaatcacatacatcagacacacatgccatgtatcgatagactaaagcctgtgatgca |
311 |
Q |
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| T |
49057814 |
atgaggttagctgccgaaaatgataattttgtgtggctaaaattaattgcatgcatcacacatgca--ccctgtattgatagactaaatccagcgattca |
49057717 |
T |
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| Q |
312 |
attcttgcagggtttcaacgggaagaaatgggagaaattcaatagtgagaaagtggcatcactcgcatatgctcgcatacaaggaaaagcagccctcgtt |
411 |
Q |
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| T |
49057716 |
att-ttgcaggcgttcaatgggaaaaaatgggagaaattcaacagtgagaaagtggcgtcacttgcatatgctcgcatacaagggaaaacagctcttgtt |
49057618 |
T |
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| Q |
412 |
gctcacttccagaattcaagcttaatgaatgaggataagcgctgcaggcctatcctcatcgacactgatggtccaaatgctggtgatcaggtataaattt |
511 |
Q |
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| T |
49057617 |
aatcatttccagcattcaagcttgatgaatgtggataagcactgcaggcctatcctcatcgacactgatggtccaaatgctggtgatcaggtagaaattt |
49057518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 449
Target Start/End: Complemental strand, 40158187 - 40158054
Alignment:
| Q |
316 |
ttgcagggtttcaacgggaagaaatgggagaaattcaatagtgagaaagtggcatcactcgcatatgctcgcatacaaggaaaagcagccctcgttgctc |
415 |
Q |
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| T |
40158187 |
ttgcaggctttccatggtaagaaatgggagaagtttaacagtgaaaaagtagcatcacttgcatatgcccgaattcaaggaagagcttctcttgtttctc |
40158088 |
T |
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| Q |
416 |
acttccagaattcaagcttaatgaatgaggataa |
449 |
Q |
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| T |
40158087 |
atttccagaattcaagcctgatgaatgaagataa |
40158054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 40158384 - 40158350
Alignment:
| Q |
143 |
ttgcagaacaaatgcaatgttggatatgcattcat |
177 |
Q |
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| T |
40158384 |
ttgcagaacaaatgtaatgttggatatgcattcat |
40158350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 504
Target Start/End: Complemental strand, 45037983 - 45037810
Alignment:
| Q |
331 |
gggaagaaatgggagaaattcaatagtgagaaagtggcatcactcgcatatgctcgcatacaaggaaaagcagccctcgttgctcacttccagaattcaa |
430 |
Q |
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| T |
45037983 |
gggaaaaaatgggagaagtttaacagtgaaaaggtagcagtacttgcatatgcccgaattcaaggaaaatctgctcttattgctcatttccagaattcaa |
45037884 |
T |
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| Q |
431 |
gcttaatgaatgaggataagcgctgcaggcctatcctcatcgacactgatggtccaaatgctggtgatcaggta |
504 |
Q |
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| T |
45037883 |
gcctgatgaatgaagataaacgttgccgccctattctattccatacagatggtccaaatgccggtgatccggta |
45037810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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