View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7319_low_1 (Length: 715)
Name: NF7319_low_1
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 6 - 387
Target Start/End: Complemental strand, 4223578 - 4223192
Alignment:
| Q |
6 |
ctagattattcttatattaattaaaaagaaggaataaatagtatgataatagaaatgggatagggtttgcggtt--tggtggacatatatgaagctaaaa |
103 |
Q |
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| T |
4223578 |
ctagatttttcttatattaattaaaaagaaggaataaatagtattataatagaaatgggatagggttttcggttgatggtggacatatatgaagctaaaa |
4223479 |
T |
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| Q |
104 |
aagcttagtggtaattgattgtg-ttgtggttgaattctaatttgcttcctaaatatggtcatgctgtaatgtgaactagcacataaaaagtgcagctaa |
202 |
Q |
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| T |
4223478 |
aagcttagtggtaattgattgtaattgtggttgaattctaatttgcttcctaaatatggtcatgctgtaatgtgaactagtacataaaaagtgcagctaa |
4223379 |
T |
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| Q |
203 |
aattttgagtggaataaccaattgtaatgaaattgacataaaaaatttgatgagccttttagattatatttggtag-----ttataacataattgaggtt |
297 |
Q |
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| T |
4223378 |
aattttgagtggaataaccaattgtaatgaaatttacataaaaaatttcatgagccttttagtttgtatttggtagttaatttataacataattgaggtt |
4223279 |
T |
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| Q |
298 |
tatctgagcccttagctttgcagttgtaaccgcaaaagttttgagaaaagaaacaaatatataagaaaaaagaagattaaatgttgaata |
387 |
Q |
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| T |
4223278 |
tatctgaggccttagctttgctattttaaccgcaaaagttttgag-gaagaaacaaatatattaggaaaa--aagattaaatgttaaata |
4223192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 404 - 586
Target Start/End: Complemental strand, 4223146 - 4222953
Alignment:
| Q |
404 |
aagaaatgttgaatatgttaaagcacaaagatagttagaaattacaaaataatttcggtcatttttagttcttcaag----------agggtttaggaat |
493 |
Q |
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| T |
4223146 |
aagaaatgttgaatatgttaaagcatgacggtggttagaaattacaaaataatttaggtcatttttagttcttaaggcgttttatggaggatttaggaat |
4223047 |
T |
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| Q |
494 |
ttttcttcatgtt-aaaagtaatttcatttgtgtggctagatgaatatggttactgtgaaaagttttaagattgtgctaaacaagattgatcaa |
586 |
Q |
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| T |
4223046 |
ttttcttcaagttgaaaagtaatttcatttgtgttgcaggatgaatatggttaccgtgaaaagttttaagattgtgctaaccaagattgatcaa |
4222953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 607 - 697
Target Start/End: Complemental strand, 4222913 - 4222823
Alignment:
| Q |
607 |
acattttataaaccagaacgttgataaatcaaatatctgtttgactaaataaaccaatatttgtattaaccggatcgttactgcaatattc |
697 |
Q |
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| T |
4222913 |
acattttctaaaccagaatgttgataaaccaaatattttcttgactaaataaaccaatatttatataaaccggatggttactacaatattc |
4222823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 6e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 269 - 560
Target Start/End: Original strand, 43002701 - 43002996
Alignment:
| Q |
269 |
tatttggtagttataacataattgaggtttatctgagcccttagctttgcagttgtaaccgcaaaagttttgagaaaagaaacaaatatataag--aaaa |
366 |
Q |
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| T |
43002701 |
tatttgctagttataacataattgaggcttatctgagcctttagctttgcagttgtaaccgcaaaagtattgag-gaagaaacaaatatataaggaaaaa |
43002799 |
T |
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| Q |
367 |
aagaagattaaatgttgaatannnnnnnnnnncttacaagaaatgttgaatatgttaaagcacaaagatagttagaaattacaaaataatttcggtcatt |
466 |
Q |
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| T |
43002800 |
aagaagattgaaggttgaat----ttttttttcttacaagaaatgttgaatatgttaaagcacgaaggtagttagaaattacaaaataatttcagtcatt |
43002895 |
T |
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| Q |
467 |
tttagttcttca-------agagggtttaggaatttttcttcatgttaaaagtaatttcatttgtgtggctagatgaatatggttactgtgaaaagtttt |
559 |
Q |
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| T |
43002896 |
tttagttcttaaggcgtttggaggaattaggaatttttcttcatgatgaaagtaatttcatttgtgttgctggatgaatattgttaccgtgaaaagtttt |
43002995 |
T |
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