View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7319_low_10 (Length: 436)
Name: NF7319_low_10
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 285 - 426
Target Start/End: Complemental strand, 35822583 - 35822442
Alignment:
| Q |
285 |
ttatgaggtagtgagtgttgtaccatccaaaaattaaatttttatatgtaaactacttcaagacatatgtatgctagagagttttgttatacccatattt |
384 |
Q |
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| T |
35822583 |
ttatgaggtagtgagtgttgtaccatccaaaaattaaatttttatgtgtaaactacttcaagacatatgtatgctagagagtttcgttatacccatattt |
35822484 |
T |
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| Q |
385 |
gggtatagttttgtcatttttaatatacttgttgttgatatt |
426 |
Q |
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| T |
35822483 |
gggtatagttttgtcatttttaatatacttgttgttggtatt |
35822442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 86 - 224
Target Start/End: Complemental strand, 35822859 - 35822720
Alignment:
| Q |
86 |
ataaataaagttgaagtgaagtgatgtcatgtggaaaatacaaaaagaacatcaaactttaatattaattgaagtcgatatcaaaagtcgca-ttatcta |
184 |
Q |
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| T |
35822859 |
ataaataaagttgaagtgaagtgatgtcatgtggaaaatacaaaaagaacaccaaactttaatattaattgaagtcgatatcaaaagtcgcatttatcta |
35822760 |
T |
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| Q |
185 |
caatattatcacaagtttaaattgaagtggacattcctta |
224 |
Q |
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| T |
35822759 |
caatattatcacaagtttaaattgaagtggacattcctta |
35822720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 35823117 - 35823047
Alignment:
| Q |
19 |
acaagggcataccagtagtggaatgaaagctagcatcttcctaactcctaaatttgatcctataattataa |
89 |
Q |
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| T |
35823117 |
acaagggcataccagtagtggaatgaaagctagcatcttcctaacttctaaatttgatcctataattataa |
35823047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 289
Target Start/End: Complemental strand, 35822695 - 35822667
Alignment:
| Q |
261 |
agacatttcttatttgaatatatattatg |
289 |
Q |
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| T |
35822695 |
agacatttcttatttgaatatatattatg |
35822667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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