View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7319_low_11 (Length: 404)
Name: NF7319_low_11
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 6 - 386
Target Start/End: Complemental strand, 2601633 - 2601246
Alignment:
| Q |
6 |
tgcaaagagatgcatagattggggtacggagcaccattcacggggtgggatgttgaaaaattgggggagggggtactaaacatgattaaggaggtgtggg |
105 |
Q |
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| T |
2601633 |
tgcaaagagatgcatagattgtggtacggagcaccattcatggggtgggatgttgaaaaattgggggagggggtactaaacatgattaaggaggtgtggg |
2601534 |
T |
|
| Q |
106 |
aatgaaaaacaatggaagaggagaaggtttgatatatgacggtgcaccaatttttctactaa----cattgtcctcgtcactttctctgatgtctctcct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2601533 |
aatgaaaaacaatggaagaggagaaggtttgatatatgacagtgcaccaatttttctactaacatgcattgtcctcgtcactttctctgatgtctctcct |
2601434 |
T |
|
| Q |
202 |
ctccattgttggcgtgttcattgattcatcaccactc-tttgatgttgttgacatatatggcaatgcacaagaagaagagcaactctctagttag--nnn |
298 |
Q |
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||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2601433 |
ctctgttgttggtgtgttcattgattcatcaccactcttttgatgttgttgacatatatggcaatgcacaagaagaagagcaactctctagttagttttt |
2601334 |
T |
|
| Q |
299 |
nnnnnnnattccaacgacgccgtaccattacaaagcctttgttggttaatcgtctctcacctcatccgccacctctaaacgtgacctc |
386 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2601333 |
tttttttattccaacgacgtcgtaccattacaaagcctttgttggttaatcgtctctcacctcatccgccacctctaaatgtgacctc |
2601246 |
T |
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