View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7319_low_13 (Length: 383)
Name: NF7319_low_13
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 50442030 - 50441681
Alignment:
| Q |
17 |
catatcagaagattcaaggtatcagatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaagattcaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50442030 |
catatcagaagattcaaggtatcagatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaagattcaat |
50441931 |
T |
|
| Q |
117 |
cgatgcgatctgcttctcgtcctgctccgaacatttcccccctacaagttagtcaaactactatcgaacaagaccaatcagacataaatttggtgttgga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50441930 |
cgatgcgatctgcttctcgtcctgctccgaacatttcccctctacaagttagtcaaactactatcgaacaagaccaatcagacataaatttggtgttgga |
50441831 |
T |
|
| Q |
217 |
gcaaagtgaaaaaggttagattcatacaccttcacacatctagttctattatgtgtaatatcaccatgttgcttgctcactaagaaatgtggtttcttgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50441830 |
gcaaagtgaaaaaggttagattcatacacctttacacatctagttctattatgtgtaatatcaccatgttgcttgctcactaagaaatgtggtttcttgt |
50441731 |
T |
|
| Q |
317 |
agaacaagcaaggaattcctatgatgctgcacaacgcaaattgcatgatg |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50441730 |
agaacaagcaaggaattcctatgatgctgcacaacgcaaattgcaagatg |
50441681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 50421876 - 50421700
Alignment:
| Q |
20 |
atcagaagattcaaggtatcagatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaagattcaatcga |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
50421876 |
atcagaagattcaaggtattcgatattcctggaacagtgtcaaaaatggcaccaaatttttgcacagtttatgtcattaataaaggaaagattcaatcga |
50421777 |
T |
|
| Q |
120 |
tgcgatctgcttctcgtcctgctccgaacatttcccccctacaagttagtcaaactactatcgaacaagaccaatca |
196 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| || ||||||| |||||||| ||||||| | |||||||| |
|
|
| T |
50421776 |
tgcgatctgcctctcgtcctgctccaaacatttcccctctgcaagttaaccaaactaccatcgaactataccaatca |
50421700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 50447019 - 50446857
Alignment:
| Q |
19 |
tatcagaagattcaaggtatcagatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaagattcaatcg |
118 |
Q |
| |
|
|||||||| |||||||| | |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50447019 |
tatcagaatattcaaggcaacagatatttctggaacggtgtcaaaaggggcaccagatttctgtacagtctatgtcattggcaatggaaagattcaatca |
50446920 |
T |
|
| Q |
119 |
atgcgatctgcttctcgtcctgctccgaacatttcccccctacaagttagtcaaactactatc |
181 |
Q |
| |
|
|||||| |||||||| || ||| ||| || |||||||| ||||||| | | ||||||||||| |
|
|
| T |
50446919 |
atgcgacctgcttctagttctgttccaaaaatttcccctctacaagccaattaaactactatc |
50446857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 249 - 334
Target Start/End: Complemental strand, 50446841 - 50446756
Alignment:
| Q |
249 |
cacacatctagttctattatgtgtaatatcaccatgttgcttgctcactaagaaatgtggtttcttgtagaacaagcaaggaattc |
334 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||| ||| || ||||||||| |||| |||| |
|
|
| T |
50446841 |
cacaaatctagttctattatgtgtaatatcaaaatgtttattgctcacaaagaaatgtgatttattttagaacaagaaaggtattc |
50446756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 1271152 - 1271277
Alignment:
| Q |
19 |
tatcagaagattcaaggtatcagatattcctggaacagtgtcaaaaggggcaccagatttttgtacagtctatgtcattggcaaaggaaagattcaatcg |
118 |
Q |
| |
|
||||||||| |||||||| ||||||||| | |||| | ||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||||| |
|
|
| T |
1271152 |
tatcagaaggttcaaggtggtagatattccagcaacaatatcaaaaggggcaccagatttttgtacagtatatgttgttggtaaaggaaaaattcaatca |
1271251 |
T |
|
| Q |
119 |
atgcgatctgcttctcgtcctgctcc |
144 |
Q |
| |
|
|||||||| ||||||||| ||||||| |
|
|
| T |
1271252 |
atgcgatcagcttctcgtgctgctcc |
1271277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University