View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7319_low_15 (Length: 371)
Name: NF7319_low_15
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 365
Target Start/End: Original strand, 53625876 - 53626224
Alignment:
| Q |
17 |
tttgctacataaagtttgggggcttcaggtgcttaataacaaaccatcatttcctagctccacaccaattccgacggccaatgttttcgaggatgttaat |
116 |
Q |
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| T |
53625876 |
tttgctacataaagtttgggggcttcaggtgcttaataacaaaccatcatttcctagctccacaccaattccgacggccaatgttttcgaggatgttaat |
53625975 |
T |
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| Q |
117 |
gttattataattgttccaatgagaacttcactttcgaggtaatatattgtttgaaatttaatttatactttggtgttttaattttataactcgttgacat |
216 |
Q |
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| T |
53625976 |
gttattataattgttccaatgagaacttcactttcgaggtaatatattgtttgaaatttaatttatactttggtgttttaattttataactcgttgacat |
53626075 |
T |
|
| Q |
217 |
aacctcatatatttgagctagattaaccacttaaagttgtggcaaaagatgttcaattttagttgttcaaatataagacaattgtacgcggcaggtcttc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53626076 |
aacctcatatatttgagctagattaaccacttaaagttgtggcaaaagatgttcaattttagttgttcaaatataaaacaattgtacgcggcaggtcttc |
53626175 |
T |
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| Q |
317 |
atgtctagttatgtaaatgaattacattacattgcaccagttcatctca |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53626176 |
atgtctagttatgtaaatgaattacattacattgcaccagttcatctca |
53626224 |
T |
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