View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7319_low_21 (Length: 353)
Name: NF7319_low_21
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 14 - 335
Target Start/End: Original strand, 35454405 - 35454726
Alignment:
| Q |
14 |
catcaacaccaaatatgtgaggaga--aaaacttgaatattaaaattctgatatgctcatctccccactgcttccttttttagacccatgtttgagttat |
111 |
Q |
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| T |
35454405 |
catcaacaccaaacatgtgaggagagaaaaacttgaatattaaaattctgatatgctcatcgccccactgcttccttttttagacccatgtttgagttat |
35454504 |
T |
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| Q |
112 |
gagtattacaa-ggaatgcttgaaatatctccatgagcagacttatcaaccataccaaatgataatccaccgttattgatgatatattagataaactgga |
210 |
Q |
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| T |
35454505 |
gagtattacaagggaatgcttgaaatatctccatgagcagacttatcaaccataccaaatgataatccaccgttat---tgatatattaggtaaactgga |
35454601 |
T |
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| Q |
211 |
atccaaaccttatagaatattttcttggttcagtcggnnnnnnnntaatacaattgaactttaaataataaagaagataagttctcttcttttttaagtc |
310 |
Q |
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| T |
35454602 |
atccaaaccttatagaatattttcttggttcagtcggaaaaaaaatattacaattgaactttaaataataaagaagataagttctcttcttttttaagtc |
35454701 |
T |
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| Q |
311 |
tccagagcagtaaatatgtattttg |
335 |
Q |
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| T |
35454702 |
tccagaacagtaaatatgtattttg |
35454726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 35441007 - 35441087
Alignment:
| Q |
95 |
acccatgtttgagttatgagtattacaaggaatgcttgaaatatctccatgagcagacttatcaaccataccaaatgataatcc |
178 |
Q |
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| T |
35441007 |
acccatgtttgagttctgagtaa---aagtcatgcttggaatatctccatgagcagacgtatcaaccataccaaatgatgatcc |
35441087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 35449055 - 35449100
Alignment:
| Q |
126 |
atgcttgaaatatctccatgagcagacttatcaaccataccaaatg |
171 |
Q |
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| T |
35449055 |
atgcttgaaaaatctccatgagcagacatatcaaccatacgaaatg |
35449100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 51575288 - 51575383
Alignment:
| Q |
92 |
tagacccatgtttgagttatgagtattacaaggaatgcttgaaatatctccatgagcagacttatcaaccataccaaatgataatccaccgttatt |
187 |
Q |
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| T |
51575288 |
tagacccatgtttgagttccgagtattataaggcatgcttgaaatatcaccacgaggagacacatcaaccataccaaatgatgaaccaccgctatt |
51575383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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