View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7319_low_25 (Length: 326)
Name: NF7319_low_25
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_low_25 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 59 - 326
Target Start/End: Complemental strand, 5922250 - 5921983
Alignment:
| Q |
59 |
tttttattatgtaagagggtaaactttggttgttatgtggctgattttgaaatgaacgttgtgtgttttattcttatgtctgtgcaggtttccaagtatg |
158 |
Q |
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| T |
5922250 |
ttttttttatgtaatagggtaaattttgattggtatgtgtctgattttgaaagggatgtggtgtgttttattcttatgtctgtgcaggtttccaagtatg |
5922151 |
T |
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| Q |
159 |
tcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgatgcttactttctctgtt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5922150 |
tcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgatgcttactttctctgtt |
5922051 |
T |
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| Q |
259 |
ttcccttctcctaaggtttccgacactgtggtcgaaccctacaacgctactttatctgttcaccagct |
326 |
Q |
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| T |
5922050 |
ttcccttctcctaaggtttctgacactgtggttgaaccctacaatgctactttatctgttcaccagct |
5921983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 139 - 326
Target Start/End: Complemental strand, 5935635 - 5935448
Alignment:
| Q |
139 |
tgtgcaggtttccaagtatgtcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacagga |
238 |
Q |
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| T |
5935635 |
tgtgcaggttttcaagtatgccattcacttggtggaggaactgggtctggaatgggtacccttttgatttcaaagatcagggaagaatacccagatagga |
5935536 |
T |
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| Q |
239 |
tgatgcttactttctctgttttcccttctcctaaggtttccgacactgtggtcgaaccctacaacgctactttatctgttcaccagct |
326 |
Q |
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| T |
5935535 |
tgatgcttactttctctgttttcccttctcctaaggtttctgacactgtggttgaaccctacaatgctaccctatctgttcaccagct |
5935448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 139 - 326
Target Start/End: Original strand, 5531858 - 5532045
Alignment:
| Q |
139 |
tgtgcaggtttccaagtatgtcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacagga |
238 |
Q |
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| T |
5531858 |
tgtgcaggatttcaagtatgccactcacttggtggaggaactgggtctggaatgggaactcttctgatttcaaagatcagggaagaatacccagacagga |
5531957 |
T |
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| Q |
239 |
tgatgcttactttctctgttttcccttctcctaaggtttccgacactgtggtcgaaccctacaacgctactttatctgttcaccagct |
326 |
Q |
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| T |
5531958 |
tgatgcttactttctctgttttcccttctcctaaggtttctgacactgtggttgaaccctacaatgctaccctctctgttcaccagct |
5532045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 278
Target Start/End: Complemental strand, 38178549 - 38178422
Alignment:
| Q |
151 |
caagtatgtcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgatgcttactt |
250 |
Q |
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| T |
38178549 |
caagtgtgtcattcattgggaggtggaactggttctggaatgggaacacttcttatttcgaagattagggaagagtatccggatcgtatgatgttgacgt |
38178450 |
T |
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| Q |
251 |
tctctgttttcccttctcctaaggtttc |
278 |
Q |
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| T |
38178449 |
tttctgtgtttccttcacctaaggtttc |
38178422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 308
Target Start/End: Complemental strand, 45453356 - 45453217
Alignment:
| Q |
169 |
ggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgatgcttactttctctgttttcccttctc |
268 |
Q |
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| T |
45453356 |
ggtggtggtactggttctggaatgggaacacttttgatttctaagatcagggaggaataccctgatcgaatgatgcttactttctctgtgttcccatctc |
45453257 |
T |
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| Q |
269 |
ctaaggtttccgacactgtggtcgaaccctacaacgctac |
308 |
Q |
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| T |
45453256 |
ctaaggtatctgacactgttgttgaaccttacaatgctac |
45453217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 320
Target Start/End: Complemental strand, 40917237 - 40917060
Alignment:
| Q |
143 |
caggtttccaagtatgtcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgat |
242 |
Q |
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||||||| ||| | |||||||| || || || ||||||||||| |||||||| ||| | |||||||| |||||||| ||||| || |||||||| ||||| |
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| T |
40917237 |
caggttttcaaatttgtcattcgcttggaggtggaactggatcaggaatgggtaccttgctcatttccaagatcagagaagagtatccagacagaatgat |
40917138 |
T |
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| Q |
243 |
gcttactttctctgttttcccttctcctaaggtttccgacactgtggtcgaaccctacaacgctactttatctgttca |
320 |
Q |
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| T |
40917137 |
gttgactttctcagtgttcccttcaccaaaggtttctgataccgtggtggaaccctacaatgcaactctctctgttca |
40917060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 284
Target Start/End: Original strand, 45319637 - 45319749
Alignment:
| Q |
172 |
ggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgatgcttactttctctgttttcccttctccta |
271 |
Q |
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|||||||| || |||||||||||||| || ||||||||||||||||| ||||||||||| || | |||||||| ||||||||||| || || ||||| | |
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| T |
45319637 |
ggaggaacgggttctggaatgggaactctactcatttcaaagatcagagaagaataccctgatcgaatgatgctcactttctctgtctttccatctccaa |
45319736 |
T |
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| Q |
272 |
aggtttccgacac |
284 |
Q |
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| T |
45319737 |
aggtgtcagacac |
45319749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 143 - 323
Target Start/End: Complemental strand, 53146940 - 53146760
Alignment:
| Q |
143 |
caggtttccaagtatgtcattcactaggtggaggaactggatctggaatgggaacccttctcatttcaaagatcagggaagaatacccagacaggatgat |
242 |
Q |
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||||||| ||||| || || || || || ||||| || || ||||| |||||||| || | || |||||||| ||||| ||||| |||||||| ||||| |
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| T |
53146940 |
caggttttcaagtttgccactcccttggaggaggcacgggttctggcatgggaacactattgatatcaaagattagggaggaatatccagacagaatgat |
53146841 |
T |
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| Q |
243 |
gcttactttctctgttttcccttctcctaaggtttccgacactgtggtcgaaccctacaacgctactttatctgttcacca |
323 |
Q |
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| T |
53146840 |
gcttactttctctgttttcccatctccaaaggtatctgacacagttgttgagccatacaatgccacattatctgtccacca |
53146760 |
T |
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