View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7319_low_26 (Length: 319)
Name: NF7319_low_26
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 29323611 - 29323913
Alignment:
| Q |
1 |
aattaaaacattttatcactaacaacttctctagtgtatgacgcttattttaaaagttgtatataattattatttcataatatgtatcagcgataacttg |
100 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29323611 |
aattaaaacctttgatcactaacaacttctctagtgtatgacacttattttaaaagttgtatataattattatttcataatatgtatcaacgataacttg |
29323710 |
T |
|
| Q |
101 |
tcccgtataagataattattttaaaatttatatcaatacaaactgacccgtttaatataatcaagcccaatacgtctcatctcgtgtatattgttatcaa |
200 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29323711 |
tcccatgtaagataattattttaaaatttatatcaatacaaaatgactcgtt-----taatcaagcccaatacgtctcatctcgtgtatattgttatcaa |
29323805 |
T |
|
| Q |
201 |
ctcatataattgaagcaatgttctgtcaatttatatttgaagcaatgtgataaccgaagagggttcaatttcattgtaca----aagcaatatgatagtc |
296 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| |
|
|
| T |
29323806 |
ctcatataattgaagcaatgttctgtcagtttatatttgaagcaatgtgataaccgaagagggttcaatattattgtacaattgaagcaatatgatagtc |
29323905 |
T |
|
| Q |
297 |
taaatagt |
304 |
Q |
| |
|
|||||||| |
|
|
| T |
29323906 |
taaatagt |
29323913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University