View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7319_low_3 (Length: 631)
Name: NF7319_low_3
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 20 - 619
Target Start/End: Original strand, 55396294 - 55396893
Alignment:
| Q |
20 |
gtcatcaccgaactcgcaagacaatgatagtaattgtgtgagtggagattccatacgggaaagatttcttagtttttatgcttcccgtggtcacaaggtc |
119 |
Q |
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| T |
55396294 |
gtcatcaccgaactcgcaagacaatgatagtaattgtgtgagtggagattccatacgggaaagatttcttagtttttatgcttcccgtggtcacaaggtc |
55396393 |
T |
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| Q |
120 |
cttcccagtgcttctctcgttccagatgaccctactgttctcctcaccattgctggtatgcttcaattcaaacctatctttcttggaaaacttcctagac |
219 |
Q |
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| T |
55396394 |
cttcccagtgcttctctcgttccagatgaccctactgttctcctcaccattgctggtatgcttcaattcaaacctatctttcttggaaaacttcctagac |
55396493 |
T |
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| Q |
220 |
aagtccctcgtgctactacttcacaacgctgcatccgtactaatgatatcaacaatgttggtcatacctcacgacatcataccttctttgagatgcttgg |
319 |
Q |
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| T |
55396494 |
aagtccctcgtgctactacttcacaacgctgcatccgtactaatgatatcaacaatgttggtcatacctcacgacatcataccttctttgagatgcttgg |
55396593 |
T |
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| Q |
320 |
taacttcagctttggtgattatttcaaaaaacaagctattcaatgggcatgggacttatctaccattgagtttggtttgcctccagaaagattatggatt |
419 |
Q |
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| T |
55396594 |
taacttcagctttggtgattatttcaaaaaacaagctattcaatgggcatgggacttatctaccattgagtttggtttgcctccagaaagattatggatt |
55396693 |
T |
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| Q |
420 |
agtgtttaccaagacgatcatgagactttccagttatggtctcaacaggtaattacatcacatttccttttaattacccctctcctcttccgttcctgtc |
519 |
Q |
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| T |
55396694 |
agtgtttaccaagacgatcatgagactttccagttatggtctcaacaggtaattacatcacatttccttttaattacccctctcctcttccgttcctgtc |
55396793 |
T |
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| Q |
520 |
atcacatcttcatttctctgcaggttggtgtccccgttgagcgaattaagaggttgggtgaagaggataacttttggacaagcggattcaccgggccctg |
619 |
Q |
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| T |
55396794 |
atcacatcttcatttctctgcaggttggtgtccccgttgagcgaattaagaggttgggtgaagaggataacttttggacaagcggagtcaccggtccctg |
55396893 |
T |
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