View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7319_low_30 (Length: 272)

Name: NF7319_low_30
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7319_low_30
NF7319_low_30
[»] chr3 (3 HSPs)
chr3 (65-254)||(32368336-32368525)
chr3 (20-110)||(32368534-32368625)
chr3 (142-219)||(18645741-18645818)
[»] chr4 (2 HSPs)
chr4 (20-230)||(26076348-26076559)
chr4 (142-219)||(5721971-5722048)
[»] chr2 (2 HSPs)
chr2 (115-237)||(12370874-12370994)
chr2 (157-254)||(3461271-3461368)
[»] chr7 (3 HSPs)
chr7 (107-254)||(5243245-5243396)
chr7 (184-254)||(35898170-35898240)
chr7 (157-236)||(296559-296638)
[»] chr1 (2 HSPs)
chr1 (20-188)||(4958422-4958591)
chr1 (142-237)||(44536499-44536594)
[»] scaffold0038 (1 HSPs)
scaffold0038 (184-237)||(48835-48888)
[»] chr6 (1 HSPs)
chr6 (184-237)||(28248673-28248726)
[»] chr8 (1 HSPs)
chr8 (124-224)||(1183007-1183107)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 65 - 254
Target Start/End: Complemental strand, 32368525 - 32368336
Alignment:
Q  65 tgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggag 164  Q
    |||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  32368525 tgaagtttggcacgatgtttccagctactaacaagaaaggagagtctaagctagagggatactctgattcagaccggtgtggagatagaatggataggag 32368426  T
Q  165 aagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 254  Q
    ||| |||| ||||| |||||||||||| ||||||| |||||| |||||||||||||||| ||||||| ||||| || |||||||||||||    
T  32368425 aagtacttctggctgcctattcaaattcaatgatgctgcaatttcatggtgcactaagagacaaccaatcactgctctatcatcatgtga 32368336  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 32368625 - 32368534
Alignment:
Q  20 catctcgctgcagctaaaagaatactgagaaatgtgaaagga-ccttgaagtttggcctgatgtttccagctactaacaagaaaagagaggc 110  Q
    |||||| ||| ||||||||||||||||||| ||||||||||| || ||||||||| |||||||||||||||||||||||||||| |||||||    
T  32368625 catctcactgtagctaaaagaatactgagatatgtgaaaggaaccctgaagtttgccctgatgtttccagctactaacaagaaaggagaggc 32368534  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 18645818 - 18645741
Alignment:
Q  142 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcact 219  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||||    
T  18645818 tgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcact 18645741  T

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Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 26076348 - 26076559
Alignment:
Q  20 catctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctag 118  Q
    |||||| ||||||||||||||||| ||||| |||||||||| || ||||||||||||||| | ||||||||| | || ||   | |||| ||| |  |||    
T  26076348 catctcactgcagctaaaagaatattgagatatgtgaaaggtacattgaagtttggcctgttatttccagctgcaaataaagtaggagaagctgaattag 26076447  T
Q  119 agggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcac 218  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||  ||||||||||||||||||||||| || |||| || |||||||||||||||||     
T  26076448 agggatactctgattcagactggtgtgaagatataatggataggaagagcacttatggctacctattcaagttcaatggtgttgcaatctcatggtgcaa 26076547  T
Q  219 taagaaacaacc 230  Q
     |||||||||||    
T  26076548 aaagaaacaacc 26076559  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 5722048 - 5721971
Alignment:
Q  142 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcact 219  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||||    
T  5722048 tgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcact 5721971  T

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Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 12370874 - 12370994
Alignment:
Q  115 ctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggt 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||  ||| |||||| | | ||||||||||||| || |||| || ||||||||||||||    
T  12370874 ctagagggatactctgattcagactggtgtggagatagaatgga--ggaaaagcacctctagctacctattcaagttcaatggtgctgcaatctcatggt 12370971  T
Q  215 gcactaagaaacaaccagtcact 237  Q
    |||| ||||||||||||||||||    
T  12370972 gcacaaagaaacaaccagtcact 12370994  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 3461271 - 3461368
Alignment:
Q  157 gataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 254  Q
    ||||||||||||||||  || ||  | |||||||| ||||||| |||||||||||||||||| ||||| |||||||||||| |  | |||||||||||    
T  3461271 gataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtga 3461368  T

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Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 107 - 254
Target Start/End: Original strand, 5243245 - 5243396
Alignment:
Q  107 aggctaagctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggcta----cctattcaaattaaatgatgatg 202  Q
    ||||||||||||| |||||||| ||||| ||||| |||||| | ||||||||||| |||||||||| ||| ||    | ||||||| || ||||||||||    
T  5243245 aggctaagctagaaggatactcagattctgactggtgtggatagagaatggatagaagaagcacttctggatatatacttattcaagttcaatgatgatg 5243344  T
Q  203 caatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 254  Q
    ||||||||||||| |||||||| |||||||||| | || |||||||||||||    
T  5243345 caatctcatggtgtactaagaagcaaccagtcaatgctctatcatcatgtga 5243396  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 35898170 - 35898240
Alignment:
Q  184 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 254  Q
    |||||||| ||||||| |||||||||||||||||| ||||| |||||||||||| |  | |||||||||||    
T  35898170 ttcaaattcaatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtga 35898240  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 296559 - 296638
Alignment:
Q  157 gataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcac 236  Q
    ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||| ||||| |||||| ||||    
T  296559 gataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcaccaagaagcaaccaatcac 296638  T

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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 4958591 - 4958422
Alignment:
Q  20 catctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctag 118  Q
    |||||| ||||||| ||||| ||| ||||| |||||||||| ||  |||||||||||||| | || ||| || | |||||  || |||| ||| | ||||    
T  4958591 catctcactgcagcaaaaaggatattgagacatgtgaaaggcacactgaagtttggcctgttattcccaactgcaaacaaagaaggagaagctgaactag 4958492  T
Q  119 agggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa 188  Q
    |||||||||||||||||||||| |||||||||||||||||||| | |||||| | | |||||||||||||    
T  4958491 agggatactctgattcagactggtgtggagatagaatggatagaaaaagcacctttagctacctattcaa 4958422  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 44536594 - 44536499
Alignment:
Q  142 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 237  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||| ||||| |||||| |||||    
T  44536594 tgtggagatctaattgataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcaccaagaagcaaccaatcact 44536499  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 48835 - 48888
Alignment:
Q  184 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 237  Q
    |||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  48835 ttcaaattcaatgatgctgcaatttcatggtgcaccaagaagcaaccagtcact 48888  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 28248673 - 28248726
Alignment:
Q  184 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 237  Q
    |||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  28248673 ttcaaattcaatgatgctgcaatttcatggtgcaccaagaagcaaccagtcact 28248726  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 1183007 - 1183107
Alignment:
Q  124 tactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaaga 223  Q
    |||||||||||||| || |||| ||||||||  |||||||||||||| | ||||||  | ||||| || ||  ||| |||||| |||||||| || ||||    
T  1183007 tactctgattcagattggtgtgaagatagaagtgataggagaagcacatctggctatgtcttcaagttcaacaatgttgcaatatcatggtgtacaaaga 1183106  T
Q  224 a 224  Q
    |    
T  1183107 a 1183107  T

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