View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7319_low_32 (Length: 245)
Name: NF7319_low_32
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 5921830 - 5921605
Alignment:
| Q |
1 |
tacatttgttcaaaaaggtttctaattttggtgtttgcttttttgtgatgcagttggtgatcttaaccatttgatatcagcaaccatgtctggtgtcaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5921830 |
tacatttgttcaaaaaggtttctaattttggtgtttgcttttttgtgatgcagttggtgatcttaaccatttgatatcagcaaccatgtctggtgtcaca |
5921731 |
T |
|
| Q |
101 |
tgttgtttgaggttccctggtcagctaaactccgatctgaggaagcttgctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5921730 |
tgttgtttgaggttccctggtcagctaaactccgatctgaggaagcttgctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttg |
5921631 |
T |
|
| Q |
201 |
cacctctgacttcaagaggttctcag |
226 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
5921630 |
cacctttgacttcaagaggttctcag |
5921605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 5935252 - 5935065
Alignment:
| Q |
39 |
ttttttgtgatgcagttggtgatcttaaccatttgatatcagcaaccatgtctggtgtcacatgttgtttgaggttccctggtcagctaaactccgatct |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5935252 |
ttttttgtgatgcagttggtgatcttaaccatttgatatcagcaactatgtctggtgtcacatgttgtttgaggttccctggtcagctgaactccgatct |
5935153 |
T |
|
| Q |
139 |
gaggaagcttgctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgacttcaagaggttctcag |
226 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| || |||||||||||||| || ||||||||| |||||||||||||||||||| |
|
|
| T |
5935152 |
taggaagcttgcagtgaatctggttccattccctcgcctccactttttcatgttagggtttgcacctttgacttcaagaggttctcag |
5935065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 49 - 213
Target Start/End: Original strand, 5532251 - 5532415
Alignment:
| Q |
49 |
tgcagttggtgatcttaaccatttgatatcagcaaccatgtctggtgtcacatgttgtttgaggttccctggtcagctaaactccgatctgaggaagctt |
148 |
Q |
| |
|
||||||||||||| | || ||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
5532251 |
tgcagttggtgatttgaatcatctgatatcagcaactatgtctggtgtcacctgttgtttgaggttccctggtcagctgaactctgatcttaggaagctt |
5532350 |
T |
|
| Q |
149 |
gctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgacttc |
213 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||| ||||| ||| ||||||| |
|
|
| T |
5532351 |
gctgtgaatctcattccattcccgcgtcttcactttttcatggtgggatttgctcctttgacttc |
5532415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 38177502 - 38177396
Alignment:
| Q |
113 |
ttccctggtcagctaaactccgatctgaggaagcttgctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgactt |
212 |
Q |
| |
|
|||||||| ||||| ||||| ||||| || ||||||||||| || || || |||||||||||||| || || || ||| | || |||||||| |||| | |
|
|
| T |
38177502 |
ttccctgggcagctgaactctgatcttagaaagcttgctgtcaaccttatcccattccctcgtctccatttctttatggttgggtttgcacccttgacat |
38177403 |
T |
|
| Q |
213 |
caagagg |
219 |
Q |
| |
|
||||||| |
|
|
| T |
38177402 |
caagagg |
38177396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 53146578 - 53146414
Alignment:
| Q |
49 |
tgcagttggtgatcttaaccatttgatatcagcaaccatgtctggtgtcacatgttgtttgaggttccctggtcagctaaactccgatctgaggaagctt |
148 |
Q |
| |
|
||||||||| ||||| |||||| |||| || ||||| ||| ||| || || |||||| ||||||| ||||| || | ||||| ||||| |||||||| |
|
|
| T |
53146578 |
tgcagttggggatctgaaccatctgatttccgcaactatgagtggggttacctgttgtctgaggtttcctggacaattgaactctgatctcaggaagctg |
53146479 |
T |
|
| Q |
149 |
gctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctctgacttc |
213 |
Q |
| |
|
||||| ||||| || |||||||| |||||||||||||| ||| | || ||||||||||| ||||| |
|
|
| T |
53146478 |
gctgtcaatctgatcccattcccacgtcttcacttttttatggttgggtttgcacctctcacttc |
53146414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 34841384 - 34841478
Alignment:
| Q |
113 |
ttccctggtcagctaaactccgatctgaggaagcttgctgtgaatctcattccattccctcgtcttcactttttcatgttgggttttgcacctct |
207 |
Q |
| |
|
||||| ||||| || ||||| ||||| |||| || || ||||||||||| ||||||||||| || ||||| |||||| | |||||||| ||||| |
|
|
| T |
34841384 |
ttcccgggtcaactcaactctgatctccggaaactggcagtgaatctcatcccattccctcgcctgcacttcttcatggttggttttgctcctct |
34841478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University