View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7319_low_35 (Length: 236)
Name: NF7319_low_35
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_low_35 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 17050040 - 17049824
Alignment:
| Q |
20 |
ttgagaagtttcatggaaatctgtattagaactgcaatgaacttttgtacctttgtcttcttaattcccagaactttagcacttcaccacaannnnnnng |
119 |
Q |
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| T |
17050040 |
ttgagaagtttcatggaaatctgtattagaactgcaatgaacttttgtacctttgtcttcttaattcccagaactttagcacttcaccacaatttttttg |
17049941 |
T |
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| Q |
120 |
gtgtccctttcttcgcataaaattcctgcgagcttccataataatagaggaattggaagnnnnnnntttagatatgatagaaataaagggtgatgataat |
219 |
Q |
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| T |
17049940 |
gtgtccctttcttcgcataaaattcctgcgagcttccataataatagaggaattggaagaaaaaaatttagatatgatagaaataaagggtgatgataat |
17049841 |
T |
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| Q |
220 |
atgaatatcgaaggttt |
236 |
Q |
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||||||||||||||||| |
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| T |
17049840 |
atgaatatcgaaggttt |
17049824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 16979829 - 16979613
Alignment:
| Q |
20 |
ttgagaagtttcatggaaatctgtattagaactgcaatgaacttttgtacctttgtcttcttaattcccagaactttagcacttcaccacaannnnnnng |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
16979829 |
ttgagaagtttcatggaaatctgtattagaactgcaatgaacttttgtacctttgtcttcttaattcccagaactttagcacttcaccaccatttttttg |
16979730 |
T |
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| Q |
120 |
gtgtccctttcttcgcataaaattcctgcgagcttccataataatagaggaattggaagnnnnnnntttagatatgatagaaataaagggtgatgataat |
219 |
Q |
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| T |
16979729 |
gtgtccctttcttcgcataaaattcctgcgagcttccataataatagaggaattggaagaaaaaaatttagatatgatagaaataaagggtgatgataat |
16979630 |
T |
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| Q |
220 |
atgaatatcgaaggttt |
236 |
Q |
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|||||||| ||||||| |
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| T |
16979629 |
atgaatatgaaaggttt |
16979613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 17031701 - 17031485
Alignment:
| Q |
20 |
ttgagaagtttcatggaaatctgtattagaactgcaatgaacttttgtacctttgtcttcttaattcccagaactttagcacttcaccacaannnnnnng |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
17031701 |
ttgagaagtttcatggaaatctgtattagaactgcaatgaacttttgtacctttgtcttcttaattcccagaactttagcacttcaccaccatttttttg |
17031602 |
T |
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| Q |
120 |
gtgtccctttcttcgcataaaattcctgcgagcttccataataatagaggaattggaagnnnnnnntttagatatgatagaaataaagggtgatgataat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17031601 |
gtgtccctttcttcgcataaaattcctgcgagcttccataataatagaggaattggaagaaaaaaatttagatatgatagaaataaagggtgatgataat |
17031502 |
T |
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| Q |
220 |
atgaatatcgaaggttt |
236 |
Q |
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|||||||| ||||||| |
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| T |
17031501 |
atgaatatgaaaggttt |
17031485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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