View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7319_low_6 (Length: 515)
Name: NF7319_low_6
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 167 - 434
Target Start/End: Original strand, 39322174 - 39322446
Alignment:
| Q |
167 |
ctttcaaaattatattctgaaaggtgnnnnnnnnccttctatttgtttacggcttgaatgtagcattagttgttggtggcaacgatgacttgtttcaatt |
266 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39322174 |
ctttcaaaattatattctgaaaggtgttttttt-ccttctatttgtttactgcttgaatgtagcattagttgttggtggcaacgatgacttgtttcaatt |
39322272 |
T |
|
| Q |
267 |
gtaaaataaacttaa------aatatgcactagctaggttgataatttagttgagtttaataatagttgataaacaatttccccttcaagaatttcaaag |
360 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39322273 |
gtataataaacttaaaattaaaatatgcactagctaggttgataatttagttgagtttaataatagttgataaacaatttccccttcaagaatttcaaag |
39322372 |
T |
|
| Q |
361 |
tagcgtattatattaatatgcaaattcctgttcgaaaaaataaaatcagtcacatattatggtcagtgtacaaa |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39322373 |
tagcgtattatattaatatgcaaattcctgttcgaaaaaataaaatcattcacatattatggtcagtgtacaaa |
39322446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 39321766 - 39321879
Alignment:
| Q |
1 |
ctgttcaaaatgttacattggttatcttccttcttctcaacatttttgttatcccttcgattcggcttttgtaatttaaaatttgatccaaggataagaa |
100 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39321766 |
ctgttcaaaaagttacattggttgtcttccttcttctcaacatttttgttatcccttcgattcggcttttgtaatttaaaatttgatccaaggataagaa |
39321865 |
T |
|
| Q |
101 |
aagtttgattcata |
114 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
39321866 |
aaatttgattcata |
39321879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 457 - 505
Target Start/End: Original strand, 39322444 - 39322492
Alignment:
| Q |
457 |
aaataatttacaaatatgcaaaagtaaagttccaggatggcacacaggt |
505 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39322444 |
aaataatttacaaataagcaaaagtaaagttccaggatggcacacaggt |
39322492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University