View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7319_low_8 (Length: 499)
Name: NF7319_low_8
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 218 - 479
Target Start/End: Complemental strand, 24707937 - 24707676
Alignment:
| Q |
218 |
gtaactaaatagtaaataannnnnnnnatcattatagtttgtttattatgcagtacttaagtattcgagaaaatgattaccaaaccattatagccgaagg |
317 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24707937 |
gtaactaaatagtaaataattttttttatcattatattttgtttattatacagtacttaagtattcgagaagatgattaccaaaccattatagccgaagg |
24707838 |
T |
|
| Q |
318 |
aatggcaagcttcataaaaattgggatatttgtcaatgcaagtgcttcctttgaaaagccattccatgnnnnnnnacataaaggagaaaacttgacatag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24707837 |
aatggcaagcttcataaaaattgggatatttgtcaatgcaagtgcttcctttgaaaagccattccatgtttttttacataaaggagaaaacttgacatag |
24707738 |
T |
|
| Q |
418 |
agtatgagtatggtaacattgagccaataggatatagaatttgctatggcggcccctccgct |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24707737 |
agtatgagtatggtaacattgagccaataggatatagaatttgctatggcggcccctccgct |
24707676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 24708142 - 24708006
Alignment:
| Q |
13 |
aatatcgaaaaggatcttgaatatgaaacaaaccaaatagaaagcactgatgtttccaactttggatttggaagaagaccggaaagaagaaccatcaatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24708142 |
aatatcgaaaaggatcttgaatatgaaacaaaccaaatagaaagcactgatgtttccaactttggatttggaagaagaccggaaagaagaaccatcaatt |
24708043 |
T |
|
| Q |
113 |
caaatgaccacatttccaagctgcttgccatgttccc |
149 |
Q |
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| T |
24708042 |
caaatgaccacaattccaagctgcttgccatgttccc |
24708006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 271 - 476
Target Start/End: Original strand, 30484442 - 30484647
Alignment:
| Q |
271 |
tacttaagtattcgagaaaatgattaccaaaccattatagccgaaggaatggcaagcttcataaaaattgggatatttgtcaatgcaagtgcttcctttg |
370 |
Q |
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|||| ||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||| | | |||||||||||||| | |
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| T |
30484442 |
tactcaagtattagagaaggtgattaccaaaccattacagctgaaggaatggcaagcttcaggaaaattgggatattgtttagcgcaagtgcttccttgg |
30484541 |
T |
|
| Q |
371 |
aaaagccattccatgnnnnnnnacataaaggagaaaacttgacatagagtatgagtatggtaacattgagccaataggatatagaatttgctatggcggc |
470 |
Q |
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|||| |||||||||| |||| ||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| |||||||||| || |
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| T |
30484542 |
aaaaaccattccatgtttttttacatgaaggagaaaacttgacatagagtgcgagtatgataacattcagccaataggatatagaacttgctatggcagc |
30484641 |
T |
|
| Q |
471 |
ccctcc |
476 |
Q |
| |
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||||| |
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| T |
30484642 |
gcctcc |
30484647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 30511698 - 30511822
Alignment:
| Q |
13 |
aatatcgaaaaggatcttgaatatgaaacaaaccaaatagaaagcactgatgtttccaactttggatttggaagaagaccggaaagaagaaccatcaatt |
112 |
Q |
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||||| ||| || ||||| |||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
30511698 |
aatattgaagagaatcttcaatatgaaaccaacctgatagaaagtactgatgtttccaacttcggatttggaagaagaccggaaagaagaaccattaatt |
30511797 |
T |
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| Q |
113 |
caaatgaccacatttccaagctgct |
137 |
Q |
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||||||||||||||||||||||||| |
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| T |
30511798 |
caaatgaccacatttccaagctgct |
30511822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 30484210 - 30484319
Alignment:
| Q |
32 |
aatatgaaacaaaccaaatagaaagcactgatgtttccaactttggatttggaagaagaccggaaagaagaaccatcaattcaaatgaccacatttccaa |
131 |
Q |
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|||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
30484210 |
aatatgcaaccaaccagatagaaagcacagatgtttccaactttggatttggaagaacaccagaaaggagaaccatcaattcaaatgaccacatttccat |
30484309 |
T |
|
| Q |
132 |
gctgcttgcc |
141 |
Q |
| |
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|||||||||| |
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| T |
30484310 |
gctgcttgcc |
30484319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 291 - 479
Target Start/End: Original strand, 30502274 - 30502462
Alignment:
| Q |
291 |
tgattaccaaaccattatagccgaaggaatggcaagcttcataaaaattgggatatttgtcaatgcaagtgcttcctttgaaaagccattccatgnnnnn |
390 |
Q |
| |
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|||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||| || ||||||||||||| | ||||| |||||||||| |
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| T |
30502274 |
tgattaccaaaccattgcagctgaaggaatggcaagcttcaagaaaatcgggatattgttcggtgcaagtgcttccctagaaaacccattccatgttttt |
30502373 |
T |
|
| Q |
391 |
nnacataaaggagaaaacttgacatagagtatgagtatggtaacattgagccaataggatatagaatttgctatggcggcccctccgct |
479 |
Q |
| |
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|||| |||||||||| || ||||||||| ||||||| ||||||||| |||||||||||||||| |||||||||| || |||||||| |
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| T |
30502374 |
tgacatgaaggagaaaattttacatagagtgagagtatgataacattgacccaataggatatagaacttgctatggcagcgcctccgct |
30502462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 30502046 - 30502147
Alignment:
| Q |
33 |
atatgaaacaaaccaaatagaaagcactgatgtttccaactttggatttggaagaagaccggaaagaagaaccatcaattcaaatgaccacatttccaag |
132 |
Q |
| |
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||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||| |
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| T |
30502046 |
atatgaaactaaccagatagaaagcaccgatgtttccaactttggatttggaaggagaccggaaaggagaaccactaattcaaatgaccatatttccaag |
30502145 |
T |
|
| Q |
133 |
ct |
134 |
Q |
| |
|
|| |
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|
| T |
30502146 |
ct |
30502147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 291 - 467
Target Start/End: Original strand, 30511920 - 30512097
Alignment:
| Q |
291 |
tgattaccaaaccattatagccgaaggaatggcaagcttcataaaaattgggatatttgtcaatgcaagtgcttcctttgaaaagccattccatgnnnnn |
390 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||||||||| |||||||||||||| ||| ||||| ||||| || ||||| ||| |||||| |
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| T |
30511920 |
tgattaccaaaccattacagctgaaggaacagcaagcttcaggaaaattgggatattgttcagtgcaaacgcttctttggaaaaaccagtccatgttttt |
30512019 |
T |
|
| Q |
391 |
nn-acataaaggagaaaacttgacatagagtatgagtatggtaacattgagccaataggatatagaatttgctatggc |
467 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
30512020 |
tttacatgaaggagaaaacttgacatagagtgcgagtatggtaacgttgatccaataggatatagaatttgctatggc |
30512097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 30380586 - 30380667
Alignment:
| Q |
37 |
gaaacaaaccaaatagaaagcactgatgtttccaactttggatttggaagaagaccggaaagaagaaccatcaattcaaatg |
118 |
Q |
| |
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||||| ||||| ||||||||||||||||||| ||| |||||||| |||||| ||| |||||||| ||||| | |||||||| |
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| T |
30380586 |
gaaactaaccatatagaaagcactgatgtttgcaattttggattgggaagagcaccagaaagaagcaccattagttcaaatg |
30380667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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