View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7319_low_9 (Length: 480)
Name: NF7319_low_9
Description: NF7319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7319_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 136 - 461
Target Start/End: Original strand, 7095097 - 7095423
Alignment:
| Q |
136 |
tattctcaaattaacacagtaccactcatgtatgagattttcattccgtatcattcatcatgtcaaaattacatagttgatatatttgcataaaccacaa |
235 |
Q |
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| T |
7095097 |
tattctcaaattaacacagtactactcatgtatgagattttcattccttatcattcatcatgtcaaaattacatagttgatatatttgcataaaccacaa |
7095196 |
T |
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| Q |
236 |
gaaagaaacagacacccttaattttctttaggttctgtttggaaattaggagtaaaagggaaagtagggttttggggatggggagagaaaaaagtatgaa |
335 |
Q |
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| T |
7095197 |
gaaagaaacagacacccttaattttctttaggttctgtttggaaattaggagtaaaagggaaagtagggtttt-gggatggggagagaaaaaagaatgaa |
7095295 |
T |
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| Q |
336 |
aactacttcatttgtattgttgtaaaacataagaacaaaatgcttattgcttaaggaaa--aatatctcaaacttgataattaatcttacacaacatgat |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
7095296 |
aactacttcatttgtattgttgtaaaacataagaacaaaatgcttattgcttaaggaaaacaatatctcaaccttgataattaatcttacacaacatgat |
7095395 |
T |
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| Q |
434 |
atgccaaaaactaattcatccttctgat |
461 |
Q |
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| T |
7095396 |
atgccaaaaactaattcatccttctgat |
7095423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 7094916 - 7095043
Alignment:
| Q |
9 |
tggtgttgttgaattagccacaaagaaattatgtcccatacatttactatataaacatcatatatatcactccactatcctaataatagttttagtcctg |
108 |
Q |
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| T |
7094916 |
tggtgttgttgaagcagccacaaagaaattatgtcccatacatttactatataaacatcatatatatcactccactatcctaataatagttttagtcccg |
7095015 |
T |
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| Q |
109 |
caggatgaaatcttaaagatataaatct |
136 |
Q |
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| T |
7095016 |
caggatgaaatcttaaagatataaatct |
7095043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 395 - 461
Target Start/End: Original strand, 7105187 - 7105253
Alignment:
| Q |
395 |
aatatctcaaacttgataattaatcttacacaacatgatatgccaaaaactaattcatccttctgat |
461 |
Q |
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| T |
7105187 |
aatatctcaaccttgataattaatcttacacaacatgatatgccaaaaactaattcatccttctgat |
7105253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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