View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7320_high_10 (Length: 499)

Name: NF7320_high_10
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7320_high_10
NF7320_high_10
[»] chr6 (6 HSPs)
chr6 (14-282)||(16571024-16571291)
chr6 (284-490)||(16570773-16570979)
chr6 (87-467)||(16872709-16873113)
chr6 (87-492)||(16579365-16579794)
chr6 (87-492)||(16615586-16616015)
chr6 (333-468)||(17040305-17040441)
[»] chr2 (3 HSPs)
chr2 (71-492)||(32790838-32791279)
chr2 (71-446)||(236357-236749)
chr2 (14-58)||(32791317-32791361)
[»] scaffold0256 (3 HSPs)
scaffold0256 (71-279)||(12471-12681)
scaffold0256 (14-58)||(14794-14838)
scaffold0256 (176-279)||(14948-15051)
[»] chr7 (1 HSPs)
chr7 (78-446)||(48300790-48301175)
[»] chr1 (2 HSPs)
chr1 (71-257)||(7389262-7389448)
chr1 (287-446)||(7389056-7389216)


Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 14 - 282
Target Start/End: Complemental strand, 16571291 - 16571024
Alignment:
Q  14 caagaacaacaaacataggttcatcctggagcctctcaacatattgacgcatgtaagaaactcagcatttatgttttctaagaaatcaactaagcttcgc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16571291 caagaacaacaaacataggttcatcctggagcctctcaacatattgacgcatgtaagaaactcagcatttatgttttctaagaaatcaactaagcttcgc 16571192  T
Q  114 caaacacgaattggtccgttatagtcggaccctt-acttagtttaattctcatctggctcaaatgaatcatcagcctttacgtttggttgctgcgctaga 212  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  16571191 caaacacgaattggtccgttatagtcggacccttaacttagtttaattctcatctggctcaactgaatcatcagcctttatgtttggttgctgcgctaga 16571092  T
Q  213 atatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcacatgcccaccaacga 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  16571091 atatcgagaatgaccaaaatattctgcacacattttttccacac--atataagcacatgcccaccaacga 16571024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 284 - 490
Target Start/End: Complemental strand, 16570979 - 16570773
Alignment:
Q  284 tttgcagaaaccacactaaaaagaatttgcagcttttatgcaggtattatagccaattttgataggtaggtaactgttcaacttgttcaaaccttccagt 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16570979 tttgcagaaaccacactaaaaagaatttgcagcttttatgcaggtattatagccaattttgataggtaggtaactgttcaacttgttcaaaccttccagt 16570880  T
Q  384 tttattccttcccctagccgccacaagatctttgaacttcttgttaaaagtgtcccatgtgatggatggatcagcatcgataatcttatcatggctctaa 483  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16570879 tttattccttctcctagccgccacaagatctttgaacttcttgttaaaagtgtcccatgtgatggatggatcagcatcgataatcttatcatggctctaa 16570780  T
Q  484 tattctt 490  Q
    |||||||    
T  16570779 tattctt 16570773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 87 - 467
Target Start/End: Complemental strand, 16873113 - 16872709
Alignment:
Q  87 ttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttatagtcggacccttacttagtttaattctcatctggctcaaatgaatcatcag 186  Q
    |||| |||||||  ||||||| ||| |||||||||||| | |||||||||||||| ||||| |||||||| |||||||||||||||   ||||||||||     
T  16873113 ttttttaagaaagaaactaagtttccccaaacacgaatcgatccgttatagtcggcccctttcttagtttcattctcatctggctcctctgaatcatcaa 16873014  T
Q  187 cctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcacatgcccaccaa------- 279  Q
    | |||| |||||| |  ||| | |||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||           
T  16873013 catttatgtttggatattgcacaagaatatcgagaatgaccaacatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggct 16872914  T
Q  280 cgaatt------------tgcagaaaccacactaaaaagaatttgcagcttttatgcaggtattat-agccaattttgataggtaggtaa---ctgttca 363  Q
     |||||             |||||||||||||||||||||||||| |||| || ||||||| || | ||||||||||||| |||||||||    || |||    
T  16872913 tgaattaacatcaaactgagcagaaaccacactaaaaagaatttgaagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatca 16872814  T
Q  364 acttgttcaaaccttccagttttattccttcccctagccgccacaagatctttgaacttcttgttaaa-agtgtcccatgtgatggatggatcagcatcg 462  Q
    ||||||||||||||| || |||| |||||||||||| | ||||||||   |||||||||||||||||| | | ||||||||||| |||||||||||||||    
T  16872813 acttgttcaaacctttcaattttcttccttcccctaactgccacaagccatttgaacttcttgttaaacaatttcccatgtgatcgatggatcagcatcg 16872714  T
Q  463 ataat 467  Q
    |||||    
T  16872713 ataat 16872709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 87 - 492
Target Start/End: Complemental strand, 16579794 - 16579365
Alignment:
Q  87 ttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttatagtcggacccttacttagtttaattctcatctggctcaaatgaatcatcag 186  Q
    |||| ||||||| |||||||| ||| ||||||||||||   | |||||||||||| ||||| |||||||| | |||||| ||||||   ||||||||||     
T  16579794 ttttttaagaaagcaactaagtttccccaaacacgaatcaatacgttatagtcggcccctttcttagtttcactctcatatggctcctctgaatcatcaa 16579695  T
Q  187 cctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcacatgcccaccaacga---- 282  Q
    | |||| |||||| | |||| | |||||||||||||||||||| ||||| |||||||||||||||||||||| |||| ||| ||||||||||| ||        
T  16579694 catttatgtttggatactgcacaagaatatcgagaatgaccaacatattatgcacacattttttccacacatttataggcatatgcccaccaatgaggct 16579595  T
Q  283 ---attt------------gcagaaaccacactaaaaagaatttgcagcttttatgcaggtattat-agccaattttgataggtaggtaac---tgttca 363  Q
       |||             ||||||||||||||||||||||||||||||| || ||||||| || | ||||||||||||| |||||||||    || |||    
T  16579594 tgaattaacatcaaactgagcagaaaccacactaaaaagaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatca 16579495  T
Q  364 acttgttcaaaccttccagttttattccttcccctagccgccacaagatctttgaacttcttgttaaa-agtgtcccatgtgatggatggatcagcatcg 462  Q
    ||||||||||||||| ||||||| |||||||||||| | ||||||||   |||||||||||||||||| | | ||||||||||| ||||||| |||||||    
T  16579494 acttgttcaaacctttcagttttcttccttcccctaactgccacaagccatttgaacttcttgttaaacaatttcccatgtgatcgatggatgagcatcg 16579395  T
Q  463 ataatcttatcatggctctaatattcttcg 492  Q
    ||||| | ||||  ||| | ||||||||||    
T  16579394 ataatatcatcaatgctgtcatattcttcg 16579365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 87 - 492
Target Start/End: Original strand, 16615586 - 16616015
Alignment:
Q  87 ttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttatagtcggacccttacttagtttaattctcatctggctcaaatgaatcatcag 186  Q
    |||| ||||||| |||||||| ||| ||||||||||||   | |||||||||||| ||||| |||||||| | |||||| ||||||   ||||||||||     
T  16615586 ttttttaagaaagcaactaagtttccccaaacacgaatcaatacgttatagtcggcccctttcttagtttcactctcatatggctcctctgaatcatcaa 16615685  T
Q  187 cctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcacatgcccaccaacga---- 282  Q
    | |||| |||||| | |||| | |||||||||||||||||||| ||||| |||||||||||||||||||||| |||| ||| ||||||||||| ||        
T  16615686 catttatgtttggatactgcacaagaatatcgagaatgaccaacatattatgcacacattttttccacacatttataggcatatgcccaccaatgaggct 16615785  T
Q  283 ---attt------------gcagaaaccacactaaaaagaatttgcagcttttatgcaggtattat-agccaattttgataggtaggtaac---tgttca 363  Q
       |||             ||||||||||||||||||||||||||||||| || ||||||| || | ||||||||||||| |||||||||    || |||    
T  16615786 tgaattaacatcaaactgagcagaaaccacactaaaaagaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatca 16615885  T
Q  364 acttgttcaaaccttccagttttattccttcccctagccgccacaagatctttgaacttcttgttaaa-agtgtcccatgtgatggatggatcagcatcg 462  Q
    ||||||||||||||| ||||||| |||||||||||| | ||||||||   |||||||||||||||||| | | ||||||||||| ||||||| |||||||    
T  16615886 acttgttcaaacctttcagttttcttccttcccctaactgccacaagccatttgaacttcttgttaaacaatttcccatgtgatcgatggatgagcatcg 16615985  T
Q  463 ataatcttatcatggctctaatattcttcg 492  Q
    ||||| | ||||  ||| | ||||||||||    
T  16615986 ataatatcatcaatgctgtcatattcttcg 16616015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 333 - 468
Target Start/End: Original strand, 17040305 - 17040441
Alignment:
Q  333 tagccaattttgataggtaggtaa-ctgttcaacttgttcaaaccttccagttttattccttcccctagccgccacaagatctttgaacttcttgttaaa 431  Q
    |||||||||| | ||||||||||| |||||||||||| |||| |||||||| ||| ||||||||||||||||||||||| | |||||||||||||||||     
T  17040305 tagccaatttagctaggtaggtaagctgttcaacttgctcaagccttccagatttcttccttcccctagccgccacaagctgtttgaacttcttgttaac 17040404  T
Q  432 agtgtcccatgtgatggatggatcagcatcgataatc 468  Q
    ||||| ||||||||| || ||||||||||||||||||    
T  17040405 agtgtgccatgtgatcgacggatcagcatcgataatc 17040441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 71 - 492
Target Start/End: Complemental strand, 32791279 - 32790838
Alignment:
Q  71 aaactcagcatttatgttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttatagtcggacccttacttagtttaattctcatctggc 170  Q
    ||||||||||| ||| ||||||| |||| |||||||| ||| | |||||||||| ||||||||||||| || ||||| |||| ||| |||||| ||| ||    
T  32791279 aaactcagcatatattttttctatgaaagcaactaagtttcccgaaacacgaatcggtccgttatagttggcccctttcttaatttcattctcttcttgc 32791180  T
Q  171 tcaaatgaatcatcagcctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcacat 270  Q
    |||| |||||||||| |||||| |||||| |||||| | |||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||| ||    
T  32791179 tcaactgaatcatcaacctttatgtttgggtgctgcaccagaatatcaagaatgaccaacatattctgcacacattttttccacacatttataggcaaat 32791080  T
Q  271 gcccaccaacga-------attt------------gcagaaaccacactaaaaagaatttgcagcttttatgcaggtattatagccaattttgataggta 351  Q
    |||| |||| ||       |||             ||| |||||||||||||||||||||||||||||| ||||||| || |||||||||||| ||||||    
T  32791079 gccccccaatgaggcttggattaacatcaaactgagcaaaaaccacactaaaaagaatttgcagcttttgtgcaggtgttttagccaattttgttaggta 32790980  T
Q  352 ggtaa-ctgttcaacttgttcaaaccttccagttttattccttcccctagccgccacaagatctttgaacttcttgttaaaagtgtcccatgtgatggat 450  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | ||| ||||||||||| |||    
T  32790979 ggtaagctgttcaacttgttcaaaccttccagttttattccttcccctagctgccacaagctctttgaacttcttgttcacagtatcccatgtgatcgat 32790880  T
Q  451 ggatcagcatcgataatcttatcatggctctaatattcttcg 492  Q
    ||||||||||| ||||| |  |||||||||| ||||||||||    
T  32790879 ggatcagcatcaataatatcgtcatggctctcatattcttcg 32790838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 71 - 446
Target Start/End: Original strand, 236357 - 236749
Alignment:
Q  71 aaactcagcatttatgttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttatagtcggacccttacttagtttaattctcatctggc 170  Q
    |||||| |||| ||| |||||||||||| |||||||| | | ||| ||| |||| ||||||| ||||||   ||||| |||||||| |||||| ||| ||    
T  236357 aaactcggcatctattttttctaagaaagcaactaagttaccccagacatgaatgggtccgtcatagtcatcccctttcttagtttcattctcgtctagc 236456  T
Q  171 tcaaatgaatcatcagcctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcacat 270  Q
    || |  ||||||||| |||||| |||||| |||||| | ||||| ||||| |||||||  || ||||||||||| ||||||||||||| |||  ||| ||    
T  236457 tccacagaatcatcaacctttatgtttgggtgctgcacgagaatgtcgaggatgaccagcatgttctgcacacactttttccacacatttatgggcatat 236556  T
Q  271 gcccac---------------caacgaa-tttgcagaaaccacactaaaaagaatttgcagcttttatgcaggtattatagccaattttgataggtaggt 354  Q
    ||||||               || | || |  |||||||||||||| ||||||||||||||||| |  |||||| || |||| | ||||| |||| | ||    
T  236557 gcccactgagtcctggattaacatcaaactgagcagaaaccacactgaaaagaatttgcagcttctgagcaggtgttttagcaacttttgttaggaaagt 236656  T
Q  355 aa-ctgttcaacttgttcaaaccttccagttttattccttcccctagccgccacaagatctttgaacttcttgttaaaagtgtcccatgtgat 446  Q
    || ||| ||||| ||||||||||||||||||   ||||| ||||| ||  ||| ||  ||||||||||||||||||| |||||||||||||||    
T  236657 aagctgctcaacctgttcaaaccttccagttcccttcctgcccctggcttccagaatctctttgaacttcttgttaacagtgtcccatgtgat 236749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 32791361 - 32791317
Alignment:
Q  14 caagaacaacaaacataggttcatcctggagcctctcaacatatt 58  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  32791361 caagaacaacaaacttaggttcatcctggagcctctcaacatatt 32791317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 71 - 279
Target Start/End: Original strand, 12471 - 12681
Alignment:
Q  71 aaactcagcatttat-gttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttat-agtcggacccttacttagtttaattctcatctg 168  Q
    ||||||||||||||| |||||||||||||| |  |||||||| |||||||||||||||| |||||| |||||||||||| |||||||||||||||||| |    
T  12471 aaactcagcatttattgttttctaagaaattatttaagcttccccaaacacgaattggtacgttattagtcggaccctttcttagtttaattctcatcag 12570  T
Q  169 gctcaaatgaatcatcagcctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcac 268  Q
    |||||| |||||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||||||||     
T  12571 gctcaactgaatcataagcctttatgtttggttgctgcgctagaatatctagaattaccaaaatattctgctcacattttttccacacatttataagcat 12670  T
Q  269 atgcccaccaa 279  Q
    |||||||||||    
T  12671 atgcccaccaa 12681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 14794 - 14838
Alignment:
Q  14 caagaacaacaaacataggttcatcctggagcctctcaacatatt 58  Q
    |||||| |||||||||||||||||| |||||||||||||||||||    
T  14794 caagaataacaaacataggttcatcttggagcctctcaacatatt 14838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 279
Target Start/End: Original strand, 14948 - 15051
Alignment:
Q  176 tgaatcatcagcctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcacatgccca 275  Q
    |||||||||| |  ||| |||||| ||||||   ||||||| ||||||||| |  | |||||||||| |||||||||||| || |||| ||| |||||||    
T  14948 tgaatcatcaacagttatgtttggatgctgccgaagaatattgagaatgacaatcaaattctgcacaaattttttccacatatttatatgcatatgccca 15047  T
Q  276 ccaa 279  Q
    ||||    
T  15048 ccaa 15051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 78 - 446
Target Start/End: Original strand, 48300790 - 48301175
Alignment:
Q  78 gcatttatgttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttatagtcggacccttacttagtttaattctcatctggctcaaatg 177  Q
    |||| ||| |||||||||||| |||||||| | | ||| ||| |||| ||||||| ||||||   ||||| ||||| || |||||||||| | || |  |    
T  48300790 gcatctattttttctaagaaagcaactaagttgccccagacatgaatgggtccgtcatagtcatcccctttcttagattcattctcatctagttccacag 48300889  T
Q  178 aatcatcagcctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatatataagcacatgcccac- 276  Q
    |||||||| |||||| |||||| |||||| | |||||||| ||||||||||  ||||||||||| || ||||||||||||| |||  ||| ||||||||     
T  48300890 aatcatcaacctttatgtttgggtgctgcacgagaatatcaagaatgaccagcatattctgcacgcactttttccacacatttatgggcatatgcccact 48300989  T
Q  277 --------------caacgaa-tttgcagaaaccacactaaaaagaatttgcagcttttatgcaggtattatagccaattttgataggtaggt-aactgt 360  Q
                  || | || |  |||||||||||||| ||||||||||||||||| | ||||||| || |||| | ||||| |||| |||| |||||     
T  48300990 gaggccaggattaacatcaaactgagcagaaaccacactgaaaagaatttgcagcttctgtgcaggtgttttagcaacttttgttaggaaggtaaactgc 48301089  T
Q  361 tcaacttgttcaaaccttccagttttattccttcccctagccgccacaagatctttgaacttcttgttaaaagtgtcccatgtgat 446  Q
    ||||| ||||||||||||||||||   ||||| ||||| ||  ||| ||  ||||||||||| ||||||| ||| |||||||||||    
T  48301090 tcaacctgttcaaaccttccagttcccttcctgcccctggcttccagaatctctttgaacttgttgttaacagtatcccatgtgat 48301175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 7389448 - 7389262
Alignment:
Q  71 aaactcagcatttatgttttctaagaaatcaactaagcttcgccaaacacgaattggtccgttatagtcggacccttacttagtttaattctcatctggc 170  Q
    |||||| |||| ||| |||||||||||| |||||||| | | ||| |||  ||| ||||||||||||||   ||||| |||||||| |||||| ||| ||    
T  7389448 aaactcggcatctattttttctaagaaagcaactaagttgccccagacattaatgggtccgttatagtcatcccctttcttagtttcattctcgtctagc 7389349  T
Q  171 tcaaatgaatcatcagcctttacgtttggttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacaca 257  Q
    || |  ||||||||| |||||| |||||| |||||| | ||||| |||||||||||||  || ||||||||||| ||||||||||||    
T  7389348 tccacagaatcatcaacctttatgtttgggtgctgcacgagaatgtcgagaatgaccagcatgttctgcacacactttttccacaca 7389262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 287 - 446
Target Start/End: Complemental strand, 7389216 - 7389056
Alignment:
Q  287 gcagaaaccacactaaaaagaatttgcagcttttatgcaggtattatagccaattttgataggtaggtaa-ctgttcaacttgttcaaaccttccagttt 385  Q
    |||||||||||||| ||||||||||||||||| |  |||||| || |||| | ||||| |||| |||||| ||| ||||| ||||||||||||||||||     
T  7389216 gcagaaaccacactgaaaagaatttgcagcttctgagcaggtgttttagcaacttttgttaggaaggtaagctgctcaacctgttcaaaccttccagttc 7389117  T
Q  386 tattccttcccctagccgccacaagatctttgaacttcttgttaaaagtgtcccatgtgat 446  Q
      ||||| ||||| ||  ||| ||  |||||||||||||||||||  ||||||||||||||    
T  7389116 ccttcctgcccctggcttccagaatctctttgaacttcttgttaaccgtgtcccatgtgat 7389056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University