View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7320_high_17 (Length: 387)
Name: NF7320_high_17
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 370
Target Start/End: Original strand, 9947694 - 9948049
Alignment:
| Q |
15 |
aatatatagatttaggatttaaatttgagggtggtgaccacaacaggactcctaatcacatgactcacatccatccaagttagatatccgaaatccaatt |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9947694 |
aatatatagatttaggatttaaatttgagggtggtgaccacaacaggactcctaaccacatgactcacatccatccaagttagatatccgaaatccaatt |
9947793 |
T |
|
| Q |
115 |
tctttaatcttgtcatgcttccaacttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatg |
214 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9947794 |
tctttaatcttgtcatgcttccaacttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttgggataacactgacatg |
9947893 |
T |
|
| Q |
215 |
aaaccctttgataggagtaatgttggcaacataaactgtttatgcctcatcaacattggtcactgttttgtggaactcttgtattctcctccaagaagaa |
314 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9947894 |
aaaccctttgataggagtaatgttggcaacataaactgtttatgcctcaccaacattggtcactgttttgtggaactcttgtattctcctccaagaagaa |
9947993 |
T |
|
| Q |
315 |
tttccaccattgaagaaagcaataaaagaagggtggttaatatccaatgaaggttt |
370 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
9947994 |
tttccaccattgaagaaagcaataaaaaaagggtggttaatatccaatgaaggttt |
9948049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 50 - 369
Target Start/End: Complemental strand, 8958812 - 8958493
Alignment:
| Q |
50 |
gaccacaacaggactcctaatcacatgactcacatccatccaagttagatatccgaaatccaatttctttaatcttgtcatgcttccaacttcattcctc |
149 |
Q |
| |
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|||||||| ||||| |||| |||||| || |||||||||||||||||| || ||| ||| |||||| | | ||||| | ||| | |||||| ||||| |
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| T |
8958812 |
gaccacaattggacttctaaccacatgcttcgtatccatccaagttagatacccaaaagccactttcttcatttttgtcgttcttgccacttcaatcctc |
8958713 |
T |
|
| Q |
150 |
aacttaaatcttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttgataggagtaatgttggcaacataaa |
249 |
Q |
| |
|
||||| | ||||| |||||||||||||||| ||| |||||||||||| ||||||||||||||| ||||||| | |||||||| | | |||||||| |
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|
| T |
8958712 |
aacttgtagcttagtttctcattcttctcattgaataccaacttgtttgggataacactgacatggaacccttcaacctgagtaatgctagaaacataaa |
8958613 |
T |
|
| Q |
250 |
ctgtttatgcctcatcaacattggtcactgttttgtggaactcttgtattctcctccaagaagaatttccaccattgaagaaagcaataaaagaagggtg |
349 |
Q |
| |
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|||||| | ||||| |||||||||| | |||| | || || ||||| || |||| |||||||||| ||| || |||||| |||||||||||||||| |
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| T |
8958612 |
ctgtttctccctcaccaacattggtaattgttctatgaaattcttgggttgtccttgaagaagaattcccattatcgaagaatgcaataaaagaagggta |
8958513 |
T |
|
| Q |
350 |
gttaatatccaatgaaggtt |
369 |
Q |
| |
|
||||| |||||| ||||||| |
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|
| T |
8958512 |
gttaagatccaaagaaggtt |
8958493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 348
Target Start/End: Complemental strand, 8963717 - 8963528
Alignment:
| Q |
159 |
cttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttgataggagtaatgttggcaacataaactgtttatg |
258 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | ||| ||||||| ||||| || |||| || ||||||||| | ||||||||||| |||| | |
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|
| T |
8963717 |
cttagcttctcattcttctcattgaacaccaacctatttggaataacaccgacattgaagccttcaattggagtaatgctagcaacataaaccgtttgtc |
8963618 |
T |
|
| Q |
259 |
cctcatcaacattggtcactgttttgtggaactcttgtattctcctccaagaagaatttccaccattgaagaaagcaataaaagaagggt |
348 |
Q |
| |
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| ||| |||||||||| ||||| |||| || ||||| | |||| ||||||||||||| | ||||| ||||||||||||||||||| |
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|
| T |
8963617 |
cttcaccaacattggtaactgtcctgtgaaattcttgggctgtccttggagaagaatttccagcgttgaaaaaagcaataaaagaagggt |
8963528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 370
Target Start/End: Original strand, 8945347 - 8945578
Alignment:
| Q |
139 |
cttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttgataggagtaatgtt |
238 |
Q |
| |
|
||||| |||||||||| | |||||| |||||||||||| || ||||| |||||| ||| |||| |||| ||| | | |||| | ||| ||||| | |
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|
| T |
8945347 |
cttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggatagcactaacacggtatccttcaacaggcataatgct |
8945446 |
T |
|
| Q |
239 |
ggcaacataaactgtttatgcctcatcaacattggtcactgttttgtggaactcttgtattctcctccaagaagaatttccaccattgaagaaagcaata |
338 |
Q |
| |
|
|||||||||| | || | ||||| |||||||||| |||||| |||| || ||||| || ||| |||||||||||||| ||||||| ||||| ||| |
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|
| T |
8945447 |
agcaacataaatggcttgtccctcaccaacattggtaactgttctgtgaaattcttggatggcccttgaagaagaatttccagcattgaaaaaagctata |
8945546 |
T |
|
| Q |
339 |
aaagaagggtggttaatatccaatgaaggttt |
370 |
Q |
| |
|
|||||||||| |||| |||||| |||||||| |
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|
| T |
8945547 |
aaagaagggtaattaagatccaaggaaggttt |
8945578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 370
Target Start/End: Complemental strand, 8975133 - 8974902
Alignment:
| Q |
139 |
cttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttgataggagtaatgtt |
238 |
Q |
| |
|
||||| |||||||||| | |||| ||||| || |||| || |||||||||||| ||| |||||| || ||||| ||||||| ||| ||||||||| |
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|
| T |
8975133 |
cttcaatcctcaacttgtagcttaatttctcgtttttcttattgaacaccaacttatttgggataactctaacatggaacccttcgattcgagtaatgtg |
8975034 |
T |
|
| Q |
239 |
ggcaacataaactgtttatgcctcatcaacattggtcactgttttgtggaactcttgtattctcctccaagaagaatttccaccattgaagaaagcaata |
338 |
Q |
| |
|
|||||||||| | || | | | | |||||||||| | |||| | || || ||||| | |||| ||||||||||| || ||||||||||||||||| |
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|
| T |
8975033 |
agcaacataaatcgattttccttgaccaacattggtaattgttctatgaaattcttgggtggtccttgaagaagaatttgcagcattgaagaaagcaata |
8974934 |
T |
|
| Q |
339 |
aaagaagggtggttaatatccaatgaaggttt |
370 |
Q |
| |
|
|||||||||| || | |||||| |||||||| |
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|
| T |
8974933 |
aaagaagggtaattgagatccaacgaaggttt |
8974902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 249
Target Start/End: Original strand, 9949258 - 9949336
Alignment:
| Q |
171 |
ttcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttgataggagtaatgttggcaacataaa |
249 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||| ||||||||| |||||||| |
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|
| T |
9949258 |
ttcttctcatggaacaccaacttgtttggaataacacatacatgaatacctttaataggtataatgttggtaacataaa |
9949336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 31 - 370
Target Start/End: Original strand, 34962022 - 34962361
Alignment:
| Q |
31 |
atttaaatttgagggtggtgaccacaacaggactcctaatcacatgactcacatccatccaagttagatatccgaaatccaatttctttaatcttgtcat |
130 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||| ||| ||| |||||||||| ||||||| |
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|
| T |
34962022 |
atttcaatttgagggtggtgaccacaataggactcctaacaacatgcttcacatccatccatgttagatatccaaaagccactttctttaattttgtcat |
34962121 |
T |
|
| Q |
131 |
gcttccaacttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttgatagga |
230 |
Q |
| |
|
||| |||||||| ||||||| || | |||||||||||||||||||||| |||||||| |||||| ||||||| ||||| |||||||||| || ||| |
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|
| T |
34962122 |
acttgcaacttcaatcctcaatttgtagcttagcttctcattcttctcattaaacaccaaattgtttgggataacagtgacacgaaaccctttaattgga |
34962221 |
T |
|
| Q |
231 |
gtaatgttggcaacataaactgtttatgcctcatcaacattggtcactgttttgtggaactcttgtattctcctccaagaagaatttccaccattgaaga |
330 |
Q |
| |
|
| |||| | |||||||||| || || | | ||| |||||||||| |||||| | | || |||||||| ||| |||||||||||||| ||||||| | |
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|
| T |
34962222 |
gcaatgctagcaacataaattgcttgtccgtcaccaacattggtaactgttctacgaaattcttgtatcggccttgaagaagaatttccatcattgaaaa |
34962321 |
T |
|
| Q |
331 |
aagcaataaaagaagggtggttaatatccaatgaaggttt |
370 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| |||||||| |
|
|
| T |
34962322 |
aagcaataaaagaagggtagttaagatccaaggaaggttt |
34962361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 249
Target Start/End: Original strand, 25927829 - 25928028
Alignment:
| Q |
45 |
gtggtgaccacaacaggactcctaatcacatgactcacatccatccaagttagatatccgaaatccaatttctttaatcttgtcatgcttccaacttcat |
144 |
Q |
| |
|
||||||||||||||||||||||||| ||| || | | |||||||||||||| |||||| ||| | | ||| ||||| |||| | ||| || | | |
|
|
| T |
25927829 |
gtggtgaccacaacaggactcctaaccacgtgctttaaatccatccaagttaaatatccaaaagctactttaattaatattgtagttcttgcatc----t |
25927924 |
T |
|
| Q |
145 |
tcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttgataggagtaatgttggcaac |
244 |
Q |
| |
|
|||| ||||| | | ||| ||||||||||||||||| ||||| ||||||||| ||||||||| ||| |||| ||||| |||| | ||||| | ||||| |
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|
| T |
25927925 |
tccttaactttagt-ttaacttctcattcttctcattaaacactaacttgtttgggataacactaacacgaaaacctttaatagcaataatgctagcaac |
25928023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 49008841 - 49008783
Alignment:
| Q |
183 |
aacaccaacttgtttaagataacactgacatgaaaccctttgataggagtaatgttggc |
241 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| ||||||| ||||| ||||||||||| |
|
|
| T |
49008841 |
aacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgttggc |
49008783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 21686680 - 21686741
Alignment:
| Q |
309 |
gaagaatttccaccattgaagaaagcaataaaagaagggtggttaatatccaatgaaggttt |
370 |
Q |
| |
|
|||||||| | | ||||| ||||||||||||||||||||| ||||| ||| || |||||||| |
|
|
| T |
21686680 |
gaagaattacgagcattggagaaagcaataaaagaagggtagttaagatctaaggaaggttt |
21686741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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