View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_high_21 (Length: 330)
Name: NF7320_high_21
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 28879310 - 28879006
Alignment:
| Q |
21 |
tataaacattatatggaagaagaaagtcaagtcctacattggaaaatgataaattgtttgctaaataatctaactatagttatatgttgtgtgagagtta |
120 |
Q |
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| T |
28879310 |
tataaacattatatggaagaagaaagtcaagtcctacattggagaatgataaattgtttgctaaaaaatctaactatagttatatgttgtgtgagagtta |
28879211 |
T |
|
| Q |
121 |
tagatgttaatatgtacttgcaagcaagaactcccatatatacttctccacttaggaacccgaaagcaaggaacttttccctgcaacgacatgggaaaag |
220 |
Q |
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| T |
28879210 |
tagatgttaatatatacttgtaagcaagaactcccatatatacttctccacttaggaacccgaaagcaaggaacttttccctgcaaggacatgggaaaag |
28879111 |
T |
|
| Q |
221 |
tcccttcgatggtggtttgggaacgaggacg------aggatcacatccccaccttaaggatattttgtgaaattcacttaaacatgtggcattacaatc |
314 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28879110 |
tcccttcaatggtggtttgggaacgaggacgaggacgaggatcacatccccaccttgaggatattttgtgaaattcacttaaacatgtgtcattacaatc |
28879011 |
T |
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| Q |
315 |
ttcat |
319 |
Q |
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||||| |
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| T |
28879010 |
ttcat |
28879006 |
T |
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