View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_high_22 (Length: 327)
Name: NF7320_high_22
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_high_22 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 48 - 312
Target Start/End: Original strand, 5458809 - 5459073
Alignment:
| Q |
48 |
ttgataaaaggcgaacgatggtgccaagtggaagagataggaagctgaagatagtgtcaacaaagtcttttgttgcttccacaaaaacaactttgtttct |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5458809 |
ttgataaaaggcgaacgatggtgccaagtggaagagataggaagctgaagatagtgtcaacaaagtcctttgttgcttccacaaaaacaactttgtttct |
5458908 |
T |
|
| Q |
148 |
ttgtttgtccactaagattttcaggggaattgttcttgtatcttcctgtggttgttcagaagccatggcaacacgttattgtataactcaaaagtcattg |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5458909 |
ttgtttgtccactaagattttcaggggaattgttcttgtatcttcttgtggttgttcagaagccatggcaacacgttattgtataactcaaaagtcattg |
5459008 |
T |
|
| Q |
248 |
gattaaccactgatttatgtatatttgatttttactatcagaagtccaaatatcaaccgtttcat |
312 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5459009 |
gattaacctgtgatttatgtatatttgatttttactatcagaagtccaaatatcaaccgtttcat |
5459073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 5437515 - 5437640
Alignment:
| Q |
52 |
taaaaggcgaacgatggtgccaagtggaagagataggaagctgaagatagtgtcaacaaagtcttttgttgcttccacaaaaacaactttgtttctttgt |
151 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
5437515 |
taaaaggcgaacaatggtgccaagtggaagagataggaagctgaatagagtgtcaacaaaatcttttgttgcttccacaaaaacaactttgcttctttgt |
5437614 |
T |
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| Q |
152 |
ttgtccactaagattttcaggggaat |
177 |
Q |
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| T |
5437615 |
ttgtccactaatattttgaggggaat |
5437640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 5487225 - 5487116
Alignment:
| Q |
53 |
aaaaggcgaacgatggtgccaagtggaagagataggaagctgaagatagtgtcaacaaagtcttttgttgcttccacaaaaacaactttgtttctttgtt |
152 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
5487225 |
aaaaggcgaacgatggtgccgagtggaagagataggaaactgaagagagtgtcaacaaaatcttttgttgcttccacgaaaacaactttgtttctttgtt |
5487126 |
T |
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| Q |
153 |
tgtccactaa |
162 |
Q |
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|||||||||| |
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| T |
5487125 |
tgtccactaa |
5487116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 5447749 - 5447882
Alignment:
| Q |
52 |
taaaaggcgaacgatggtgccaagtggaagagataggaagctgaagatagtgtcaacaaagtcttttgttgcttccacaaaaacaactttgtttctttgt |
151 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||||||| ||||||||||| |||||| |
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| T |
5447749 |
taaaaggcgaacaattgtgccaagtggaagagataggaagctgaaaagagtgtcaacaaagtccttttttgcttccacaaatacaactttgttgctttgt |
5447848 |
T |
|
| Q |
152 |
ttgtccactaagattttcaggggaattgttcttg |
185 |
Q |
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|| | ||| |||||||| | | |||||||||||| |
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| T |
5447849 |
ttatgcaccaagattttgacgtgaattgttcttg |
5447882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 5508470 - 5508359
Alignment:
| Q |
45 |
tggttgataaaaggcgaacgatggtgccaagtggaagagataggaagctgaagatagtgtcaacaaagtcttttgttgcttccacaaaaacaactttgtt |
144 |
Q |
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|||||| ||||||||| |||||||| |||||||| | ||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5508470 |
tggttgctaaaaggcggacgatggtaccaagtggcaaagataggaagctgaaaagagtctcaacaaagtcttttgttgcttccacaaaaacaactttgtt |
5508371 |
T |
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| Q |
145 |
tctttgtttgtc |
156 |
Q |
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| T |
5508370 |
gctttgtttgtc |
5508359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 5999509 - 5999630
Alignment:
| Q |
56 |
aggcgaacgatggtgccaagtggaagagataggaagctgaagatagtgtcaacaaagtcttttgttgcttccacaaaaacaactttgtttctttgtttgt |
155 |
Q |
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||||||| ||||||| | ||||||||||| ||||||||||||| ||||||||| |||||||| |||| ||| ||| |||||||| || ||| | ||| |
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| T |
5999509 |
aggcgaatgatggtggcgagtggaagagaaaggaagctgaagagagtgtcaacgaagtctttggttgattctacagcgacaactttattgttttctctgt |
5999608 |
T |
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| Q |
156 |
ccactaagattttcaggggaat |
177 |
Q |
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| T |
5999609 |
ctactaagattttcagtggaat |
5999630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 5981374 - 5981468
Alignment:
| Q |
50 |
gataaaaggcgaacgatggtgccaagtggaagagataggaagctgaagatagtgtcaacaaagtcttttgttgcttccacaaaaacaactttgtt |
144 |
Q |
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||||||||| ||| ||||||| | ||||||||||| ||||||||||||| |||||| | ||||||||||||| ||| ||| ||| |||||||| |
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| T |
5981374 |
gataaaaggtgaatgatggtggcgagtggaagagaaaggaagctgaagagagtgtcgatgaagtcttttgttgattctacagcaactactttgtt |
5981468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 5629647 - 5629553
Alignment:
| Q |
50 |
gataaaaggcgaacgatggtgccaagtggaagagataggaagctgaagatagtgtcaacaaagtcttttgttgcttccacaaaaacaactttgtt |
144 |
Q |
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||||||||||||| ||| ||| | |||||||| || ||||||||||||| |||||| | ||||| ||||||||||| ||| ||||||||||| |
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| T |
5629647 |
gataaaaggcgaatgatagtggcgagtggaagtgaaaggaagctgaagagagtgtcgatgaagtcctttgttgcttctacagcgacaactttgtt |
5629553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 14695 - 14587
Alignment:
| Q |
73 |
aagtggaagagataggaagctgaagatagtgtcaacaaagtcttttgttgcttccacaaaaacaactttgtttctttgtttgtccactaagattttcagg |
172 |
Q |
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|||||||||||||||||||||||| | ||| |||||| || ||||| ||||||||||||||||||| |||| ||||||||||||| |||||| || ||| |
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| T |
14695 |
aagtggaagagataggaagctgaaaagagtctcaacatagatttttgctgcttccacaaaaacaactctgttgctttgtttgtccattaagatctttagg |
14596 |
T |
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| Q |
173 |
ggaattgtt |
181 |
Q |
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||||||||| |
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| T |
14595 |
ggaattgtt |
14587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 1213532 - 1213424
Alignment:
| Q |
73 |
aagtggaagagataggaagctgaagatagtgtcaacaaagtcttttgttgcttccacaaaaacaactttgtttctttgtttgtccactaagattttcagg |
172 |
Q |
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|||||||||||||||||||||||| | ||| |||||| || ||||| ||||||||||||||||||| |||| ||||||||||||| |||||| || ||| |
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| T |
1213532 |
aagtggaagagataggaagctgaaaagagtctcaacatagatttttgctgcttccacaaaaacaactctgttgctttgtttgtccattaagatctttagg |
1213433 |
T |
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| Q |
173 |
ggaattgtt |
181 |
Q |
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||||||||| |
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| T |
1213432 |
ggaattgtt |
1213424 |
T |
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