View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_high_25 (Length: 290)
Name: NF7320_high_25
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 26017311 - 26017031
Alignment:
| Q |
1 |
aacaaaaatcttagactatatattggtccttgcacatgcatccattttgtaaatcccattaaccataaattcaataagacctttccaaatttgtttaata |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26017311 |
aacaaaaatcttagactatatattggtccttacacatgtatccattttgtaaatcccattaaccataaatttaataagacctttccaaatttgtttaata |
26017212 |
T |
|
| Q |
101 |
aatctatatagtatnnnnnnnnnnnnnnnn-gatgaacaaatccatgcaacccatgaagttacctgtttagattgtccatgaagatcaagagaagcagag |
199 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26017211 |
aatctatatagtataaaaaaaaaaaaaaaaagatgaacaaatccatgcaacccatgaagttacctgtttagattgtccatgaagatcaagagaagcagag |
26017112 |
T |
|
| Q |
200 |
taacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacattcttc |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26017111 |
taacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacatccttc |
26017031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 154 - 280
Target Start/End: Complemental strand, 26002114 - 26001988
Alignment:
| Q |
154 |
tgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaaccca |
253 |
Q |
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||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||| || || | |||| ||||||||||||||||||| ||| |
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| T |
26002114 |
tgaagttacctgttttgattcaccatgaagatcaacagaagcagaataacgatcctccatatgttttctacctcctttcttacaatacacagaaaatcca |
26002015 |
T |
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| Q |
254 |
tctccttctacctcaacaacattcttc |
280 |
Q |
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||||| || ||||||||||||| |||| |
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| T |
26002014 |
tctccctccacctcaacaacatccttc |
26001988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 30373307 - 30373232
Alignment:
| Q |
200 |
taacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacat |
275 |
Q |
| |
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|||||||| ||||||| || ||| || |||||||||||||| |||||| |||||||||| || |||||||||||| |
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| T |
30373307 |
taacgatcttccatatactccctcctccctctcttacaataaacagaatacccatctccctccgcctcaacaacat |
30373232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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