View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_high_28 (Length: 255)
Name: NF7320_high_28
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 29181508 - 29181278
Alignment:
| Q |
17 |
catcatcctctccaaataacaacaacaacccttttcaaaaaccccaaaacactttctcccaaattctcaaaacccttaacccctttacctcacctctctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29181508 |
catcatcctctccaaataacaacaacaacccttttcaaaaaccccaaaacactttctcccaaattctcaaaacccttaacccctttacctcacctctctt |
29181409 |
T |
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| Q |
117 |
tgaacctgcttacgtcgcagtagcacttctcgctttattcttattccgttttcaacaaaaccccgccaccgccaggtcaccactcccatcaccaccacca |
216 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29181408 |
tgaacctgcttacgtcgcagtagcacttctcgctctcttcttattccgttttcaacaaaaccccgccaccgccaggtcaccactcccatcaccaccacca |
29181309 |
T |
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| Q |
217 |
gcacaatcctccactgctaccacgaccacca |
247 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
29181308 |
gcacaatcctccactgctaccacgaccacca |
29181278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 27998950 - 27998891
Alignment:
| Q |
69 |
tttctcccaaattctcaaaacccttaa-cccctttacctcacctctctttgaacctgctt |
127 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
27998950 |
tttctcccaaattctcaaaacccttaaccccctttacctcacctctcttcgaacctgctt |
27998891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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